feat: Add DICOM SEG support and MPR, referenceLines and StackSync and more (#3015)
* feat: add initial sop class handler for SEG * feat: move segmentation service * update segmentation service methods * fix: viewport data structure * feat: Add initial render for the DICOM SEG for each displaySet * fix: various wrong architectural dependencies between services * feat: initial separate SEG display in each viewport * feat: refactore viewport action bar * initial work for SEG hydration * fix: various bugs regarding drag and dropping different viewports * fix: rendering issues for multiple seg displaysets * fix: bugs for thumbnail and hydration * feat: fix the initial segment color * update after rebase * feat: initial design for the segmentation group table * feat: initial new design for the segmentation panel * feat: segmentation panel * feat: make segmentation appear on all related viewports * fix: segmentation load bug based on functional groups * initial work for segmentation crosshairs * fix: various stylings and functionality * fix: various stylings for the seg panel * fix: overflow styles * feat: add more ui components * feat: added segmentation config * feat: add jump to segment * feat: add jump to segment for DICOM SEG viewport * fix: bugs after rebase * feat: jump in segmentation viewport * fix: mpr support for seg * feat: add more icons * feat: new icons * feat: add new side panel * feat: add segmentation config * feat: add loading indicator to ohif * feat: make hanging protocols follow matching rules for viewports * feat: enhance drag and drop to be hanging protocol aware * fix: mpr restore previous layout * fix: crosshairs toggle * fix: add auth headers to the dicom loader via dicomwebclient * fix: bug for crosshairs toggle in mpr * fix: seg viewport reusing old toolGroup * feat: add loading animation with lottie * fix: various bugs for Segmentation hydration in mpr * feat: change outline alpha to outline opacity * feat: loading indicator for seg viewport * fix: various segmentation group styles * fix: local mode for seg * feat: add animation for the highlight * fix: loading indicatro to show segment indices * feat: enhance modality drop down ui * fix: panels * fix: download form * fix: layout shift in loading indicator * fix: loading indicator to have correct values * fix: update software number * fix: image jump between MPR and default * fix: segmentation cleanup and cine service cleanup * fix: segmentation toolgroup clena up * fix: highlight interval should not trigger again * fix: issue with multiframe sorting * rename: change onSeriesChange to onArrowsClick * fix: buttons for tmtv and layout shift * fix: various bugs wrt crosshairs * fix: crosshairs re init on reset camera * fix: middle slice calculation different from cs middle reset camera * fix: reset camera should reset viewport camera * fix: loading segments in MPR mode * fix: tmtv hp back to before * fix: layout shift * feat: orientation markers for volume viewport * fix: capture for volume viewports * fix: memory leak for back to worklist * fix: loading bar bg color * fix: side panel for only one panel * fix: react select style in production * fix: various styling for segmentation groups * fix: various ui styles * feat: add new segmentation config styles * fix: hover state for segmentation item * fix: side panel layout shift * temp add panels * try to fix scrollbar for thimbnail * fix: scroll not appearing for side panels * feat: changed styles for scrollbar * feat: add cpu fallback warning * fix: webworker destroy * fix: select styles * fix: orientation marker color and position * fix: capture screenshot for volume viewports * fix: hide segment visibility on mpr * fix: reloading an already loaded seg displayset * feat: add is equal * fix: mpr jump to measurements * apply review comments * fix: optimization for the segmentation load * fix: remove unnecessary context menu and hp service reset * fix: segmentation service wrt brush settings * feat: initial work for the stack synchronization * fix: add validateDisplaySetSelectorsForNewDisplaySets to make sure drag and drop can follow requirements * fix: various react proptypes * fix: thumbnails for the tmtv and change default props to default params * feat: make showing loading indicator configurable and add docs * bump versions and add more docs * fix demo * update cornerstone versions * apply review comments * feat: add reference lines * fix build * fix unit tests * add reference lines icon * fix: e2e tests * fix static wado config * docs: add segmentation service docs * fix: docker build * fix: keep camera and bump versions * Try re-enabling minification to fix deploy previews Co-authored-by: Erik Ziegler <erik.sweed@gmail.com>
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@@ -1,144 +1,140 @@
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import { Types } from '@ohif/core';
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const MPRHangingProtocolGenerator: Types.HangingProtocol.ProtocolGenerator = ({
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servicesManager,
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commandsManager,
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}) => {
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const {
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ViewportGridService,
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UINotificationService,
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DisplaySetService,
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} = servicesManager.services;
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const { activeViewportIndex, viewports } = ViewportGridService.getState();
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const viewportDisplaySetInstanceUIDs =
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viewports[activeViewportIndex].displaySetInstanceUIDs;
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if (
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!viewportDisplaySetInstanceUIDs ||
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!viewportDisplaySetInstanceUIDs.length
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) {
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return;
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}
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const displaySetsToHang = viewportDisplaySetInstanceUIDs.map(
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displaySetInstanceUID => {
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const displaySet = DisplaySetService.getDisplaySetByUID(
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displaySetInstanceUID
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);
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return displaySet;
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}
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);
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if (displaySetsToHang.some(ds => !ds.isReconstructable)) {
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UINotificationService.show({
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title: 'Multiplanar reconstruction (MPR) ',
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message:
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'Cannot create MPR for this series since it is not reconstructable.',
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type: 'warning',
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displayTime: 3000,
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});
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return;
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}
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const matchingDisplaySets = {};
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displaySetsToHang.forEach(displaySet => {
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const {
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displaySetInstanceUID,
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SeriesInstanceUID,
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StudyInstanceUID,
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} = displaySet;
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matchingDisplaySets[displaySetInstanceUID] = {
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displaySetInstanceUID,
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SeriesInstanceUID,
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StudyInstanceUID,
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} as Types.HangingProtocol.DisplaySetMatchDetails;
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});
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const hpViewports: Types.HangingProtocol.Viewport[] = [
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'axial',
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'sagittal',
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'coronal',
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].map(viewportOrientation => {
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return {
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viewportOptions: {
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toolGroupId: 'mpr',
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viewportType: 'volume',
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orientation: viewportOrientation,
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initialImageOptions: {
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preset: 'middle',
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},
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syncGroups: [
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{
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type: 'voi',
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id: 'mpr',
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source: true,
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target: true,
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const mpr = {
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id: 'mpr',
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locked: true,
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hasUpdatedPriorsInformation: false,
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name: 'mpr',
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createdDate: '2021-02-23T19:22:08.894Z',
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modifiedDate: '2022-10-04T19:22:08.894Z',
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availableTo: {},
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editableBy: {},
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protocolMatchingRules: [],
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displaySetSelectors: {
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mprDisplaySet: {
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seriesMatchingRules: [
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{
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weight: 1,
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attribute: 'isReconstructable',
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constraint: {
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equals: {
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value: true,
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},
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},
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],
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required: true,
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},
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],
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},
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},
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stages: [
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{
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id: 'mpr3Stage',
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name: 'mpr',
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viewportStructure: {
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layoutType: 'grid',
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properties: {
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rows: 1,
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columns: 3,
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layoutOptions: [
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{
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x: 0,
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y: 0,
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width: 1 / 3,
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height: 1,
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},
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{
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x: 1 / 3,
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y: 0,
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width: 1 / 3,
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height: 1,
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},
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{
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x: 2 / 3,
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y: 0,
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width: 1 / 3,
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height: 1,
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},
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],
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},
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},
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displaySets: viewportDisplaySetInstanceUIDs.map(displaySetInstanceUID => {
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return {
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id: displaySetInstanceUID,
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};
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}),
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};
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});
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const protocol = {
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id: 'mpr',
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displaySetSelectors: {},
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stages: [
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{
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id: 'mprStage',
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name: 'mpr',
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viewportStructure: {
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layoutType: 'grid',
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properties: {
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rows: 1,
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columns: 3,
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layoutOptions: [
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viewports: [
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{
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viewportOptions: {
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toolGroupId: 'mpr',
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viewportType: 'volume',
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orientation: 'axial',
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initialImageOptions: {
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preset: 'middle',
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},
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syncGroups: [
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{
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x: 0,
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y: 0,
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width: 1 / 3,
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height: 1,
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},
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{
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x: 1 / 3,
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y: 0,
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width: 1 / 3,
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height: 1,
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},
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{
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x: 2 / 3,
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y: 0,
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width: 1 / 3,
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height: 1,
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type: 'voi',
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id: 'mpr',
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source: true,
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target: true,
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},
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],
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},
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displaySets: [
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{
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id: 'mprDisplaySet',
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},
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],
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},
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viewports: hpViewports,
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},
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],
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};
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return {
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protocol,
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matchingDisplaySets,
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};
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{
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viewportOptions: {
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toolGroupId: 'mpr',
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viewportType: 'volume',
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orientation: 'sagittal',
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initialImageOptions: {
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preset: 'middle',
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},
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syncGroups: [
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{
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type: 'voi',
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id: 'mpr',
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source: true,
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target: true,
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},
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],
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},
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displaySets: [
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{
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id: 'mprDisplaySet',
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},
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],
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},
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{
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viewportOptions: {
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toolGroupId: 'mpr',
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viewportType: 'volume',
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orientation: 'coronal',
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initialImageOptions: {
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preset: 'middle',
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},
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syncGroups: [
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{
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type: 'voi',
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id: 'mpr',
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source: true,
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target: true,
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},
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],
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},
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displaySets: [
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{
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id: 'mprDisplaySet',
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},
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],
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},
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],
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},
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],
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};
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function getHangingProtocolModule() {
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return [
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{
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id: 'mpr',
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protocol: MPRHangingProtocolGenerator,
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protocol: mpr,
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},
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];
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}
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