Chore/kill yalc with fire (#629)
* init * more shifting * Move @babel dependencies up to workspace root * Begin updating dependent libraries to use sync'd webpack builds w/ watches * Commit changes before a long weekend * Split packages into platform and extensions * Consolidate how/where we specify file/module type entrypoints * Make it possible to pass in extensions as App props * Resolve viewer's modules * Target for UMD bundle * Add Webpack Stylus loader * Provide WebPack build options for microscopy, vtk, and ui * Better entrypoint for extensions * Push changes up to switch PCs * Fix ESM symlink build for Viewers * Shift docs to root * Specify additional lerna config props * Begin providing basic readme info * Rename example extension folder * Shift links to bottom of doc * First attempt at a netlify deploy preview * Attempt to fix deploy preview build * push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands * Try to use global gitbook-cli * Export node_modules path * More agressive with modifying PATH * Follow deploy log output advice * try again to set bin path * Try swapping bash with a new shell * Try bash -l instead of exec bash * Annd let's try again * and again * We may have figured it out johnny, boy * We need to pull cornerstone-wado-image-loader files from hoisted node_modules * Attempt to fix ticks/escapes * Change copy syntax; try running tests on viewers from root for circleci * Lower version to match circleci image * Try alternative jest-canvas-mock location and version file syntax * Run version command instead of calling node directly * Try alternative jest transform * Set path and enable workspaces * Add codecov flags * Use cpx so our copying finishes? * Get all platform unit tests to run * Run and report individually and in parallel * Try once relying on codecov yaml to split w/ flags * Add projects to split by flags * Generate separate reports * Trigger codecov after everything has finished running; these may not support flags * Use recommended flags from issue comments for codecov * Fix typo * Remove clear flag * Shift back to calling codecov from root * Generate example for codecov issue * Try fixing paths * Simplify * Try using codecov orb * Bump circleci version * Upload core and viewer * Use full string paths * Remove individual codecov calls * Fix dir * Combine files before upload * Escape anchors * tryfix syntax * Escape string literal * Combine lines to reduce path * long paths * Use home alias * Fix filename * Try to see the contents of our cat'd file * Also upload `core` * Try running with aliased folder * Fix path; split PR and Merge unit tests into separate jobs * Set default threshold * Fix typo * Changing to scoped package names * Adding note * Catch more updates * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.0 - @ohif/extension-dicom-html@0.0.4-alpha.0 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0 - @ohif/extension-dicom-pdf@0.0.8-alpha.0 - @ohif/extension-vtk@0.1.4-alpha.0 - @ohif/core@0.11.1-alpha.0 - @ohif/i18n@0.2.3-alpha.0 - @ohif/ui@0.2.18-alpha.0 - @ohif/viewer@0.0.22-alpha.0 * Clean up primary readme * Support for dev and dev:* commands * Shift build command; satisfy default PWA build * Remove old scripts * Clean up UI to set webpack scripts * Tidy up project links * Clean duplicate code in UI project * Update UI project's docs * Clean up ui and i18n config * Reduce duplicate code in `@ohif/core` * Fix @ohif/ui versions * bump @ohif/core versions * Redux testkit dep * Remove unused/duplicate config files for projects/packages * ohif-core --> @ohif/core * Safer publish command * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.1 - @ohif/extension-dicom-html@0.0.4-alpha.1 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1 - @ohif/extension-dicom-pdf@0.0.8-alpha.1 - @ohif/extension-vtk@0.1.4-alpha.1 - @ohif/core@0.11.1-alpha.1 - @ohif/i18n@0.2.3-alpha.1 - @ohif/ui@0.2.18-alpha.1 - @ohif/viewer@0.0.22-alpha.1 * test version bump * Add global prettier config * chore(release): publish %s [skip ci] - @ohif/viewer@0.0.22-alpha.2 * test lerna publish * Update package.jsons * Fix build scripts * catch changes * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.2 - @ohif/extension-dicom-html@0.0.4-alpha.2 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2 - @ohif/extension-dicom-pdf@0.0.8-alpha.2 - @ohif/extension-vtk@0.1.4-alpha.2 - @ohif/core@0.11.1-alpha.2 - @ohif/i18n@0.2.3-alpha.2 - @ohif/ui@0.2.18-alpha.2 - @ohif/viewer@0.0.22-alpha.3 * fix eslint issues caused by eslint 6 and our react-app config * Publish with canary tag * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.3 - @ohif/extension-dicom-html@0.0.4-alpha.3 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3 - @ohif/extension-dicom-pdf@0.0.8-alpha.3 - @ohif/extension-vtk@0.1.4-alpha.3 - @ohif/core@0.11.1-alpha.3 - @ohif/i18n@0.2.3-alpha.3 - @ohif/ui@0.2.18-alpha.3 - @ohif/viewer@0.0.22-alpha.4 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.4 - @ohif/extension-dicom-html@0.0.4-alpha.4 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4 - @ohif/extension-dicom-pdf@0.0.8-alpha.4 - @ohif/extension-vtk@0.1.4-alpha.4 - @ohif/core@0.11.1-alpha.4 - @ohif/i18n@0.2.3-alpha.4 - @ohif/ui@0.2.18-alpha.4 - @ohif/viewer@0.0.22-alpha.5 * Simplify build * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.5 - @ohif/extension-dicom-html@0.0.4-alpha.5 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5 - @ohif/extension-dicom-pdf@0.0.8-alpha.5 - @ohif/extension-vtk@0.1.4-alpha.5 - @ohif/core@0.11.1-alpha.5 - @ohif/i18n@0.2.3-alpha.5 - @ohif/ui@0.2.18-alpha.5 - @ohif/viewer@0.0.22-alpha.6 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.6 - @ohif/extension-dicom-html@0.0.4-alpha.6 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6 - @ohif/extension-dicom-pdf@0.0.8-alpha.6 - @ohif/extension-vtk@0.1.4-alpha.6 - @ohif/core@0.11.1-alpha.6 - @ohif/i18n@0.2.3-alpha.6 - @ohif/ui@0.2.18-alpha.6 - @ohif/viewer@0.0.22-alpha.7 * Split version and publish * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.7 - @ohif/extension-dicom-html@0.0.4-alpha.7 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7 - @ohif/extension-dicom-pdf@0.0.8-alpha.7 - @ohif/extension-vtk@0.1.4-alpha.7 - @ohif/core@0.11.1-alpha.7 - @ohif/i18n@0.2.3-alpha.7 - @ohif/ui@0.2.18-alpha.7 - @ohif/viewer@0.0.22-alpha.8 * Try simplify netlify build * react-viewerbase --> @ohif/ui * add test for stylus loader * Try new way to specify publish path * Use an output folder that won't be ignored * Try move command * fiddle with paths * Dig for some information * Make sure we're in root for our commands * Remove discovery * Setup script-tag example * Fix typo * Move config folder * Update cornerstone extension to use shared/root webpack configs * capture changes * Update extension webpack configs * Don't check in docz output * Fix babel runtime resolution issue * Simplify ui build steps * Push in progress * Shift directories * Get viewer dev path to work * Fix viewer commonjs build * Fix build pwa config for viewers * Make sure our package specific command can be called from root * Update notes * Fix imports and misc. merge notes * Bump wado-image-loader version * Switch up commands to remove webworkers copy * Fix CI config * Fix more broken package references * Add react-dropzone * Persist so e2e test can use * Fix lockfile * Use cypress orb to simplify CI * Fix config * Try again * Install yarn latest for orb * Install yarn a different way * Wait on correct port * Run tests in viewer project * Fix cypress config * Make Cypress happier - use default location * Simplify e2e testing * Capture UI changes since fork * Catch core up * Grab latest deps after merge * Fix broken import * Make sure cornerstone-wado-image-loader resolves to 3+ * Note regarding orbs * Fix refresh on 404 routes * Fix odd error for cornerstone-wado-image-loader * Different target for UMD * Simplify dev script * Try to get fancy with netlify output * Let's do it again * Try to fix measurementTools issue * See if we can get our lerna magic to work on merge to monorepo branch
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import log from '../log.js';
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import OHIFError from './OHIFError';
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import cornerstone from 'cornerstone-core';
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import cornerstoneTools from 'cornerstone-tools';
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import getImageId from '../utils/getImageId.js';
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export class StudyPrefetcher {
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constructor(studies) {
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this.studies = studies || [];
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this.prefetchDisplaySetsTimeout = 300;
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this.lastActiveViewportElement = null;
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cornerstone.events.addEventListener(
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'cornerstoneimagecachefull.StudyPrefetcher',
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this.cacheFullHandler
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);
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}
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destroy() {
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this.stopPrefetching();
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cornerstone.events.removeEventListener(
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'cornerstoneimagecachefull.StudyPrefetcher',
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this.cacheFullHandler
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);
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}
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static getInstance() {
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if (!StudyPrefetcher.instance) {
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StudyPrefetcher.instance = new StudyPrefetcher([]);
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}
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return StudyPrefetcher.instance;
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}
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setStudies(studies) {
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this.stopPrefetching();
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this.studies = studies;
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}
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prefetch() {
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if (!this.studies || !this.studies.length) {
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return;
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}
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this.stopPrefetching();
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this.prefetchDisplaySets();
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}
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stopPrefetching() {
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cornerstoneTools.requestPoolManager.clearRequestStack('prefetch');
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}
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prefetchDisplaySetsAsync(timeout) {
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timeout = timeout || this.prefetchDisplaySetsTimeout;
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clearTimeout(this.prefetchDisplaySetsHandler);
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this.prefetchDisplaySetsHandler = setTimeout(() => {
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this.prefetchDisplaySets();
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}, timeout);
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}
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prefetchDisplaySets() {
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// TODO: Allow passing in config
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let config = {
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order: 'closest',
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displaySetCount: 1,
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};
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const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(config);
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const imageIds = this.getImageIdsFromDisplaySets(displaySetsToPrefetch);
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this.prefetchImageIds(imageIds);
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}
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prefetchImageIds(imageIds) {
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const nonCachedImageIds = this.filterCachedImageIds(imageIds);
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const requestPoolManager = cornerstoneTools.requestPoolManager;
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const requestType = 'prefetch';
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const preventCache = false;
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const noop = () => {};
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nonCachedImageIds.forEach(imageId => {
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requestPoolManager.addRequest(
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{},
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imageId,
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requestType,
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preventCache,
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noop,
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noop
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);
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});
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requestPoolManager.startGrabbing();
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}
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getStudy(image) {
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const studyMetadata = cornerstone.metaData.get('study', image.imageId);
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return OHIF.viewer.Studies.find(
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study => study.studyInstanceUid === studyMetadata.studyInstanceUid
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);
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}
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getSeries(study, image) {
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const seriesMetadata = cornerstone.metaData.get('series', image.imageId);
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const studyMetadata = OHIF.viewerbase.getStudyMetadata(study);
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return studyMetadata.getSeriesByUID(seriesMetadata.seriesInstanceUid);
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}
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getInstance(series, image) {
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const instanceMetadata = cornerstone.metaData.get(
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'instance',
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image.imageId
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);
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return series.getInstanceByUID(instanceMetadata.sopInstanceUid);
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}
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getActiveDisplaySet(displaySets, instance) {
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return displaySets.find(displaySet => {
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return displaySet.images.some(displaySetImage => {
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return displaySetImage.sopInstanceUid === instance.sopInstanceUid;
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});
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});
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}
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getDisplaySetsToPrefetch(config) {
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const image = this.getActiveViewportImage();
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if (!image || !config || !config.displaySetCount) {
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return [];
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}
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/*const study = this.getStudy(image);
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const series = this.getSeries(study, image);
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const instance = this.getInstance(series, image);*/
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const displaySets = study.displaySets;
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const activeDisplaySet = null; //this.getActiveDisplaySet(displaySets, instance);
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const prefetchMethodMap = {
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topdown: 'getFirstDisplaySets',
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downward: 'getNextDisplaySets',
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closest: 'getClosestDisplaySets',
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};
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const prefetchOrder = config.order;
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const methodName = prefetchMethodMap[prefetchOrder];
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const getDisplaySets = this[methodName];
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if (!getDisplaySets) {
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if (prefetchOrder) {
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log.warn(`Invalid prefetch order configuration (${prefetchOrder})`);
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}
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return [];
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}
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return getDisplaySets.call(
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this,
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displaySets,
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activeDisplaySet,
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config.displaySetCount
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);
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}
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getFirstDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
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const length = displaySets.length;
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const selectedDisplaySets = [];
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for (let i = 0; i < length && displaySetCount; i++) {
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const displaySet = displaySets[i];
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if (displaySet !== activeDisplaySet) {
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selectedDisplaySets.push(displaySet);
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displaySetCount--;
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}
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}
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return selectedDisplaySets;
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}
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getNextDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
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const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
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const begin = activeDisplaySetIndex + 1;
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const end = Math.min(begin + displaySetCount, displaySets.length);
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return displaySets.slice(begin, end);
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}
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getClosestDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
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const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
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const length = displaySets.length;
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const selectedDisplaySets = [];
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let left = activeDisplaySetIndex - 1;
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let right = activeDisplaySetIndex + 1;
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while ((left >= 0 || right < length) && displaySetCount) {
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if (left >= 0) {
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selectedDisplaySets.push(displaySets[left]);
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displaySetCount--;
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left--;
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}
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if (right < length && displaySetCount) {
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selectedDisplaySets.push(displaySets[right]);
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displaySetCount--;
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right++;
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}
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}
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return selectedDisplaySets;
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}
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getImageIdsFromDisplaySets(displaySets) {
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let imageIds = [];
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displaySets.forEach(displaySet => {
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imageIds = imageIds.concat(this.getImageIdsFromDisplaySet(displaySet));
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});
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return imageIds;
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}
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getImageIdsFromDisplaySet(displaySet) {
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const imageIds = [];
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// TODO: This duplicates work done by the stack manager
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displaySet.images.forEach(image => {
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const numFrames = image.numFrames;
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if (numFrames > 1) {
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for (let i = 0; i < numFrames; i++) {
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let imageId = getImageId(image, i);
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imageIds.push(imageId);
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}
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} else {
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let imageId = getImageId(image);
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imageIds.push(imageId);
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}
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});
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return imageIds;
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}
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filterCachedImageIds(imageIds) {
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return imageIds.filter(imageId => !this.isImageCached(imageId));
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}
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isImageCached(imageId) {
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const image = cornerstone.imageCache.imageCache[imageId];
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return image && image.sizeInBytes;
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}
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cacheFullHandler = () => {
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log.warn('Cache full');
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this.stopPrefetching();
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};
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}
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