Chore/kill yalc with fire (#629)

* init

* more shifting

* Move @babel dependencies up to workspace root

* Begin updating dependent libraries to use sync'd webpack builds w/ watches

* Commit changes before a long weekend

* Split packages into platform and extensions

* Consolidate how/where we specify file/module type entrypoints

* Make it possible to pass in extensions as App props

* Resolve viewer's modules

* Target for UMD bundle

* Add Webpack Stylus loader

* Provide WebPack build options for microscopy, vtk, and ui

* Better entrypoint for extensions

* Push changes up to switch PCs

* Fix ESM symlink build for Viewers

* Shift docs to root

* Specify additional lerna config props

* Begin providing basic readme info

* Rename example extension folder

* Shift links to bottom of doc

* First attempt at a netlify deploy preview

* Attempt to fix deploy preview build

* push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands

* Try to use global gitbook-cli

* Export node_modules path

* More agressive with modifying PATH

* Follow deploy log output advice

* try again to set bin path

* Try swapping bash with a new shell

* Try bash -l instead of exec bash

* Annd let's try again

* and again

* We may have figured it out johnny, boy

* We need to pull cornerstone-wado-image-loader files from hoisted node_modules

* Attempt to fix ticks/escapes

* Change copy syntax; try running tests on viewers from root for circleci

* Lower version to match circleci image

* Try alternative jest-canvas-mock location and version file syntax

* Run version command instead of calling node directly

* Try alternative jest transform

* Set path and enable workspaces

* Add codecov flags

* Use cpx so our copying finishes?

* Get all platform unit tests to run

* Run and report individually and in parallel

* Try once relying on codecov yaml to split w/ flags

* Add projects to split by flags

* Generate separate reports

* Trigger codecov after everything has finished running; these may not support flags

* Use recommended flags from issue comments for codecov

* Fix typo

* Remove clear flag

* Shift back to calling codecov from root

* Generate example for codecov issue

* Try fixing paths

* Simplify

* Try using codecov orb

* Bump circleci version

* Upload core and viewer

* Use full string paths

* Remove individual codecov calls

* Fix dir

* Combine files before upload

* Escape anchors

* tryfix syntax

* Escape string literal

* Combine lines to reduce path

* long paths

* Use home alias

* Fix filename

* Try to see the contents of our cat'd file

* Also upload `core`

* Try running with aliased folder

* Fix path; split PR and Merge unit tests into separate jobs

* Set default threshold

* Fix typo

* Changing to scoped package names

* Adding note

* Catch more updates

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.0
 - @ohif/extension-dicom-html@0.0.4-alpha.0
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0
 - @ohif/extension-dicom-pdf@0.0.8-alpha.0
 - @ohif/extension-vtk@0.1.4-alpha.0
 - @ohif/core@0.11.1-alpha.0
 - @ohif/i18n@0.2.3-alpha.0
 - @ohif/ui@0.2.18-alpha.0
 - @ohif/viewer@0.0.22-alpha.0

* Clean up primary readme

* Support for dev and dev:* commands

* Shift build command; satisfy default PWA build

* Remove old scripts

* Clean up UI to set webpack scripts

* Tidy up project links

* Clean duplicate code in UI project

* Update UI project's docs

* Clean up ui and i18n config

* Reduce duplicate code in `@ohif/core`

* Fix @ohif/ui versions

* bump @ohif/core versions

* Redux testkit dep

* Remove unused/duplicate config files for projects/packages

* ohif-core --> @ohif/core

* Safer publish command

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.1
 - @ohif/extension-dicom-html@0.0.4-alpha.1
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1
 - @ohif/extension-dicom-pdf@0.0.8-alpha.1
 - @ohif/extension-vtk@0.1.4-alpha.1
 - @ohif/core@0.11.1-alpha.1
 - @ohif/i18n@0.2.3-alpha.1
 - @ohif/ui@0.2.18-alpha.1
 - @ohif/viewer@0.0.22-alpha.1

* test version bump

* Add global prettier config

* chore(release): publish %s [skip ci]

 - @ohif/viewer@0.0.22-alpha.2

* test lerna publish

* Update package.jsons

* Fix build scripts

* catch changes

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.2
 - @ohif/extension-dicom-html@0.0.4-alpha.2
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2
 - @ohif/extension-dicom-pdf@0.0.8-alpha.2
 - @ohif/extension-vtk@0.1.4-alpha.2
 - @ohif/core@0.11.1-alpha.2
 - @ohif/i18n@0.2.3-alpha.2
 - @ohif/ui@0.2.18-alpha.2
 - @ohif/viewer@0.0.22-alpha.3

* fix eslint issues caused by eslint 6 and our react-app config

* Publish with canary tag

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.3
 - @ohif/extension-dicom-html@0.0.4-alpha.3
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3
 - @ohif/extension-dicom-pdf@0.0.8-alpha.3
 - @ohif/extension-vtk@0.1.4-alpha.3
 - @ohif/core@0.11.1-alpha.3
 - @ohif/i18n@0.2.3-alpha.3
 - @ohif/ui@0.2.18-alpha.3
 - @ohif/viewer@0.0.22-alpha.4

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.4
 - @ohif/extension-dicom-html@0.0.4-alpha.4
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4
 - @ohif/extension-dicom-pdf@0.0.8-alpha.4
 - @ohif/extension-vtk@0.1.4-alpha.4
 - @ohif/core@0.11.1-alpha.4
 - @ohif/i18n@0.2.3-alpha.4
 - @ohif/ui@0.2.18-alpha.4
 - @ohif/viewer@0.0.22-alpha.5

* Simplify build

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.5
 - @ohif/extension-dicom-html@0.0.4-alpha.5
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5
 - @ohif/extension-dicom-pdf@0.0.8-alpha.5
 - @ohif/extension-vtk@0.1.4-alpha.5
 - @ohif/core@0.11.1-alpha.5
 - @ohif/i18n@0.2.3-alpha.5
 - @ohif/ui@0.2.18-alpha.5
 - @ohif/viewer@0.0.22-alpha.6

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.6
 - @ohif/extension-dicom-html@0.0.4-alpha.6
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6
 - @ohif/extension-dicom-pdf@0.0.8-alpha.6
 - @ohif/extension-vtk@0.1.4-alpha.6
 - @ohif/core@0.11.1-alpha.6
 - @ohif/i18n@0.2.3-alpha.6
 - @ohif/ui@0.2.18-alpha.6
 - @ohif/viewer@0.0.22-alpha.7

* Split version and publish

* chore(release): publish %s [skip ci]

 - @ohif/extension-cornerstone@0.0.39-alpha.7
 - @ohif/extension-dicom-html@0.0.4-alpha.7
 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7
 - @ohif/extension-dicom-pdf@0.0.8-alpha.7
 - @ohif/extension-vtk@0.1.4-alpha.7
 - @ohif/core@0.11.1-alpha.7
 - @ohif/i18n@0.2.3-alpha.7
 - @ohif/ui@0.2.18-alpha.7
 - @ohif/viewer@0.0.22-alpha.8

* Try simplify netlify build

* react-viewerbase --> @ohif/ui

* add test for stylus loader

* Try new way to specify publish path

* Use an output folder that won't be ignored

* Try move command

* fiddle with paths

* Dig for some information

* Make sure we're in root for our commands

* Remove discovery

* Setup script-tag example

* Fix typo

* Move config folder

* Update cornerstone extension to use shared/root webpack configs

* capture changes

* Update extension webpack configs

* Don't check in docz output

* Fix babel runtime resolution issue

* Simplify ui build steps

* Push in progress

* Shift directories

* Get viewer dev path to work

* Fix viewer commonjs build

* Fix build pwa config for viewers

* Make sure our package specific command can be called from root

* Update notes

* Fix imports and misc. merge notes

* Bump wado-image-loader version

* Switch up commands to remove webworkers copy

* Fix CI config

* Fix more broken package references

* Add react-dropzone

* Persist so e2e test can use

* Fix lockfile

* Use cypress orb to simplify CI

* Fix config

* Try again

* Install yarn latest for orb

* Install yarn a different way

* Wait on correct port

* Run tests in viewer project

* Fix cypress config

* Make Cypress happier - use default location

* Simplify e2e testing

* Capture UI changes since fork

* Catch core up

* Grab latest deps after merge

* Fix broken import

* Make sure cornerstone-wado-image-loader resolves to 3+

* Note regarding orbs

* Fix refresh on 404 routes

* Fix odd error for cornerstone-wado-image-loader

* Different target for UMD

* Simplify dev script

* Try to get fancy with netlify output

* Let's do it again

* Try to fix measurementTools issue

* See if we can get our lerna magic to work on merge to monorepo branch
This commit is contained in:
Danny Brown authored and GitHub committed 2019-08-13 15:36:46 -04:00
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import log from '../log.js';
import OHIFError from './OHIFError';
import cornerstone from 'cornerstone-core';
import cornerstoneTools from 'cornerstone-tools';
import getImageId from '../utils/getImageId.js';
export class StudyPrefetcher {
constructor(studies) {
this.studies = studies || [];
this.prefetchDisplaySetsTimeout = 300;
this.lastActiveViewportElement = null;
cornerstone.events.addEventListener(
'cornerstoneimagecachefull.StudyPrefetcher',
this.cacheFullHandler
);
}
destroy() {
this.stopPrefetching();
cornerstone.events.removeEventListener(
'cornerstoneimagecachefull.StudyPrefetcher',
this.cacheFullHandler
);
}
static getInstance() {
if (!StudyPrefetcher.instance) {
StudyPrefetcher.instance = new StudyPrefetcher([]);
}
return StudyPrefetcher.instance;
}
setStudies(studies) {
this.stopPrefetching();
this.studies = studies;
}
prefetch() {
if (!this.studies || !this.studies.length) {
return;
}
this.stopPrefetching();
this.prefetchDisplaySets();
}
stopPrefetching() {
cornerstoneTools.requestPoolManager.clearRequestStack('prefetch');
}
prefetchDisplaySetsAsync(timeout) {
timeout = timeout || this.prefetchDisplaySetsTimeout;
clearTimeout(this.prefetchDisplaySetsHandler);
this.prefetchDisplaySetsHandler = setTimeout(() => {
this.prefetchDisplaySets();
}, timeout);
}
prefetchDisplaySets() {
// TODO: Allow passing in config
let config = {
order: 'closest',
displaySetCount: 1,
};
const displaySetsToPrefetch = this.getDisplaySetsToPrefetch(config);
const imageIds = this.getImageIdsFromDisplaySets(displaySetsToPrefetch);
this.prefetchImageIds(imageIds);
}
prefetchImageIds(imageIds) {
const nonCachedImageIds = this.filterCachedImageIds(imageIds);
const requestPoolManager = cornerstoneTools.requestPoolManager;
const requestType = 'prefetch';
const preventCache = false;
const noop = () => {};
nonCachedImageIds.forEach(imageId => {
requestPoolManager.addRequest(
{},
imageId,
requestType,
preventCache,
noop,
noop
);
});
requestPoolManager.startGrabbing();
}
getStudy(image) {
const studyMetadata = cornerstone.metaData.get('study', image.imageId);
return OHIF.viewer.Studies.find(
study => study.studyInstanceUid === studyMetadata.studyInstanceUid
);
}
getSeries(study, image) {
const seriesMetadata = cornerstone.metaData.get('series', image.imageId);
const studyMetadata = OHIF.viewerbase.getStudyMetadata(study);
return studyMetadata.getSeriesByUID(seriesMetadata.seriesInstanceUid);
}
getInstance(series, image) {
const instanceMetadata = cornerstone.metaData.get(
'instance',
image.imageId
);
return series.getInstanceByUID(instanceMetadata.sopInstanceUid);
}
getActiveDisplaySet(displaySets, instance) {
return displaySets.find(displaySet => {
return displaySet.images.some(displaySetImage => {
return displaySetImage.sopInstanceUid === instance.sopInstanceUid;
});
});
}
getDisplaySetsToPrefetch(config) {
const image = this.getActiveViewportImage();
if (!image || !config || !config.displaySetCount) {
return [];
}
/*const study = this.getStudy(image);
const series = this.getSeries(study, image);
const instance = this.getInstance(series, image);*/
const displaySets = study.displaySets;
const activeDisplaySet = null; //this.getActiveDisplaySet(displaySets, instance);
const prefetchMethodMap = {
topdown: 'getFirstDisplaySets',
downward: 'getNextDisplaySets',
closest: 'getClosestDisplaySets',
};
const prefetchOrder = config.order;
const methodName = prefetchMethodMap[prefetchOrder];
const getDisplaySets = this[methodName];
if (!getDisplaySets) {
if (prefetchOrder) {
log.warn(`Invalid prefetch order configuration (${prefetchOrder})`);
}
return [];
}
return getDisplaySets.call(
this,
displaySets,
activeDisplaySet,
config.displaySetCount
);
}
getFirstDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
const length = displaySets.length;
const selectedDisplaySets = [];
for (let i = 0; i < length && displaySetCount; i++) {
const displaySet = displaySets[i];
if (displaySet !== activeDisplaySet) {
selectedDisplaySets.push(displaySet);
displaySetCount--;
}
}
return selectedDisplaySets;
}
getNextDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
const begin = activeDisplaySetIndex + 1;
const end = Math.min(begin + displaySetCount, displaySets.length);
return displaySets.slice(begin, end);
}
getClosestDisplaySets(displaySets, activeDisplaySet, displaySetCount) {
const activeDisplaySetIndex = displaySets.indexOf(activeDisplaySet);
const length = displaySets.length;
const selectedDisplaySets = [];
let left = activeDisplaySetIndex - 1;
let right = activeDisplaySetIndex + 1;
while ((left >= 0 || right < length) && displaySetCount) {
if (left >= 0) {
selectedDisplaySets.push(displaySets[left]);
displaySetCount--;
left--;
}
if (right < length && displaySetCount) {
selectedDisplaySets.push(displaySets[right]);
displaySetCount--;
right++;
}
}
return selectedDisplaySets;
}
getImageIdsFromDisplaySets(displaySets) {
let imageIds = [];
displaySets.forEach(displaySet => {
imageIds = imageIds.concat(this.getImageIdsFromDisplaySet(displaySet));
});
return imageIds;
}
getImageIdsFromDisplaySet(displaySet) {
const imageIds = [];
// TODO: This duplicates work done by the stack manager
displaySet.images.forEach(image => {
const numFrames = image.numFrames;
if (numFrames > 1) {
for (let i = 0; i < numFrames; i++) {
let imageId = getImageId(image, i);
imageIds.push(imageId);
}
} else {
let imageId = getImageId(image);
imageIds.push(imageId);
}
});
return imageIds;
}
filterCachedImageIds(imageIds) {
return imageIds.filter(imageId => !this.isImageCached(imageId));
}
isImageCached(imageId) {
const image = cornerstone.imageCache.imageCache[imageId];
return image && image.sizeInBytes;
}
cacheFullHandler = () => {
log.warn('Cache full');
this.stopPrefetching();
};
}