Chore/kill yalc with fire (#629)
* init * more shifting * Move @babel dependencies up to workspace root * Begin updating dependent libraries to use sync'd webpack builds w/ watches * Commit changes before a long weekend * Split packages into platform and extensions * Consolidate how/where we specify file/module type entrypoints * Make it possible to pass in extensions as App props * Resolve viewer's modules * Target for UMD bundle * Add Webpack Stylus loader * Provide WebPack build options for microscopy, vtk, and ui * Better entrypoint for extensions * Push changes up to switch PCs * Fix ESM symlink build for Viewers * Shift docs to root * Specify additional lerna config props * Begin providing basic readme info * Rename example extension folder * Shift links to bottom of doc * First attempt at a netlify deploy preview * Attempt to fix deploy preview build * push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands * Try to use global gitbook-cli * Export node_modules path * More agressive with modifying PATH * Follow deploy log output advice * try again to set bin path * Try swapping bash with a new shell * Try bash -l instead of exec bash * Annd let's try again * and again * We may have figured it out johnny, boy * We need to pull cornerstone-wado-image-loader files from hoisted node_modules * Attempt to fix ticks/escapes * Change copy syntax; try running tests on viewers from root for circleci * Lower version to match circleci image * Try alternative jest-canvas-mock location and version file syntax * Run version command instead of calling node directly * Try alternative jest transform * Set path and enable workspaces * Add codecov flags * Use cpx so our copying finishes? * Get all platform unit tests to run * Run and report individually and in parallel * Try once relying on codecov yaml to split w/ flags * Add projects to split by flags * Generate separate reports * Trigger codecov after everything has finished running; these may not support flags * Use recommended flags from issue comments for codecov * Fix typo * Remove clear flag * Shift back to calling codecov from root * Generate example for codecov issue * Try fixing paths * Simplify * Try using codecov orb * Bump circleci version * Upload core and viewer * Use full string paths * Remove individual codecov calls * Fix dir * Combine files before upload * Escape anchors * tryfix syntax * Escape string literal * Combine lines to reduce path * long paths * Use home alias * Fix filename * Try to see the contents of our cat'd file * Also upload `core` * Try running with aliased folder * Fix path; split PR and Merge unit tests into separate jobs * Set default threshold * Fix typo * Changing to scoped package names * Adding note * Catch more updates * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.0 - @ohif/extension-dicom-html@0.0.4-alpha.0 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0 - @ohif/extension-dicom-pdf@0.0.8-alpha.0 - @ohif/extension-vtk@0.1.4-alpha.0 - @ohif/core@0.11.1-alpha.0 - @ohif/i18n@0.2.3-alpha.0 - @ohif/ui@0.2.18-alpha.0 - @ohif/viewer@0.0.22-alpha.0 * Clean up primary readme * Support for dev and dev:* commands * Shift build command; satisfy default PWA build * Remove old scripts * Clean up UI to set webpack scripts * Tidy up project links * Clean duplicate code in UI project * Update UI project's docs * Clean up ui and i18n config * Reduce duplicate code in `@ohif/core` * Fix @ohif/ui versions * bump @ohif/core versions * Redux testkit dep * Remove unused/duplicate config files for projects/packages * ohif-core --> @ohif/core * Safer publish command * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.1 - @ohif/extension-dicom-html@0.0.4-alpha.1 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1 - @ohif/extension-dicom-pdf@0.0.8-alpha.1 - @ohif/extension-vtk@0.1.4-alpha.1 - @ohif/core@0.11.1-alpha.1 - @ohif/i18n@0.2.3-alpha.1 - @ohif/ui@0.2.18-alpha.1 - @ohif/viewer@0.0.22-alpha.1 * test version bump * Add global prettier config * chore(release): publish %s [skip ci] - @ohif/viewer@0.0.22-alpha.2 * test lerna publish * Update package.jsons * Fix build scripts * catch changes * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.2 - @ohif/extension-dicom-html@0.0.4-alpha.2 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2 - @ohif/extension-dicom-pdf@0.0.8-alpha.2 - @ohif/extension-vtk@0.1.4-alpha.2 - @ohif/core@0.11.1-alpha.2 - @ohif/i18n@0.2.3-alpha.2 - @ohif/ui@0.2.18-alpha.2 - @ohif/viewer@0.0.22-alpha.3 * fix eslint issues caused by eslint 6 and our react-app config * Publish with canary tag * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.3 - @ohif/extension-dicom-html@0.0.4-alpha.3 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3 - @ohif/extension-dicom-pdf@0.0.8-alpha.3 - @ohif/extension-vtk@0.1.4-alpha.3 - @ohif/core@0.11.1-alpha.3 - @ohif/i18n@0.2.3-alpha.3 - @ohif/ui@0.2.18-alpha.3 - @ohif/viewer@0.0.22-alpha.4 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.4 - @ohif/extension-dicom-html@0.0.4-alpha.4 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4 - @ohif/extension-dicom-pdf@0.0.8-alpha.4 - @ohif/extension-vtk@0.1.4-alpha.4 - @ohif/core@0.11.1-alpha.4 - @ohif/i18n@0.2.3-alpha.4 - @ohif/ui@0.2.18-alpha.4 - @ohif/viewer@0.0.22-alpha.5 * Simplify build * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.5 - @ohif/extension-dicom-html@0.0.4-alpha.5 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5 - @ohif/extension-dicom-pdf@0.0.8-alpha.5 - @ohif/extension-vtk@0.1.4-alpha.5 - @ohif/core@0.11.1-alpha.5 - @ohif/i18n@0.2.3-alpha.5 - @ohif/ui@0.2.18-alpha.5 - @ohif/viewer@0.0.22-alpha.6 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.6 - @ohif/extension-dicom-html@0.0.4-alpha.6 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6 - @ohif/extension-dicom-pdf@0.0.8-alpha.6 - @ohif/extension-vtk@0.1.4-alpha.6 - @ohif/core@0.11.1-alpha.6 - @ohif/i18n@0.2.3-alpha.6 - @ohif/ui@0.2.18-alpha.6 - @ohif/viewer@0.0.22-alpha.7 * Split version and publish * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.7 - @ohif/extension-dicom-html@0.0.4-alpha.7 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7 - @ohif/extension-dicom-pdf@0.0.8-alpha.7 - @ohif/extension-vtk@0.1.4-alpha.7 - @ohif/core@0.11.1-alpha.7 - @ohif/i18n@0.2.3-alpha.7 - @ohif/ui@0.2.18-alpha.7 - @ohif/viewer@0.0.22-alpha.8 * Try simplify netlify build * react-viewerbase --> @ohif/ui * add test for stylus loader * Try new way to specify publish path * Use an output folder that won't be ignored * Try move command * fiddle with paths * Dig for some information * Make sure we're in root for our commands * Remove discovery * Setup script-tag example * Fix typo * Move config folder * Update cornerstone extension to use shared/root webpack configs * capture changes * Update extension webpack configs * Don't check in docz output * Fix babel runtime resolution issue * Simplify ui build steps * Push in progress * Shift directories * Get viewer dev path to work * Fix viewer commonjs build * Fix build pwa config for viewers * Make sure our package specific command can be called from root * Update notes * Fix imports and misc. merge notes * Bump wado-image-loader version * Switch up commands to remove webworkers copy * Fix CI config * Fix more broken package references * Add react-dropzone * Persist so e2e test can use * Fix lockfile * Use cypress orb to simplify CI * Fix config * Try again * Install yarn latest for orb * Install yarn a different way * Wait on correct port * Run tests in viewer project * Fix cypress config * Make Cypress happier - use default location * Simplify e2e testing * Capture UI changes since fork * Catch core up * Grab latest deps after merge * Fix broken import * Make sure cornerstone-wado-image-loader resolves to 3+ * Note regarding orbs * Fix refresh on 404 routes * Fix odd error for cornerstone-wado-image-loader * Different target for UMD * Simplify dev script * Try to get fancy with netlify output * Let's do it again * Try to fix measurementTools issue * See if we can get our lerna magic to work on merge to monorepo branch
This commit is contained in:
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@@ -0,0 +1,391 @@
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import {
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vtkInteractorStyleMPRCrosshairs,
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vtkInteractorStyleMPRWindowLevel,
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vtkInteractorStyleMPRSlice,
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vtkSVGCrosshairsWidget,
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vtkSVGWidgetManager,
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} from 'react-vtkjs-viewport';
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import setMPRLayout from './utils/setMPRLayout.js';
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import setViewportToVTK from './utils/setViewportToVTK.js';
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import vtkCoordinate from 'vtk.js/Sources/Rendering/Core/Coordinate';
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import vtkMath from 'vtk.js/Sources/Common/Core/Math';
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import vtkMatrixBuilder from 'vtk.js/Sources/Common/Core/MatrixBuilder';
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import Constants from 'vtk.js/Sources/Rendering/Core/VolumeMapper/Constants.js';
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const { BlendMode } = Constants;
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// TODO: Put this somewhere else
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let apis = {};
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let currentSlabThickness = 0.1;
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function getCrosshairCallbackForIndex(index) {
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return ({ worldPos }) => {
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// Set camera focal point to world coordinate for linked views
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apis.forEach((api, viewportIndex) => {
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if (viewportIndex !== index) {
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// We are basically doing the same as getSlice but with the world coordinate
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// that we want to jump to instead of the camera focal point.
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// I would rather do the camera adjustment directly but I keep
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// doing it wrong and so this is good enough for now.
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const istyle = renderWindow.getInteractor().getInteractorStyle();
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const sliceNormal = istyle.getSliceNormal();
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const transform = vtkMatrixBuilder
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.buildFromDegree()
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.identity()
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.rotateFromDirections(sliceNormal, [1, 0, 0]);
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const mutatedWorldPos = worldPos.slice();
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transform.apply(mutatedWorldPos);
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const slice = mutatedWorldPos[0];
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istyle.setSlice(slice);
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renderWindow.render();
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}
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const renderer = api.genericRenderWindow.getRenderer();
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const wPos = vtkCoordinate.newInstance();
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wPos.setCoordinateSystemToWorld();
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wPos.setValue(worldPos);
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const displayPosition = wPos.getComputedDisplayValue(renderer);
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const { svgWidgetManager } = api;
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api.svgWidgets.crosshairsWidget.setPoint(
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displayPosition[0],
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displayPosition[1]
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);
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svgWidgetManager.render();
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});
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};
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}
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async function _getActiveViewportVTKApi(viewports) {
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const { layout, viewportSpecificData, activeViewportIndex } = viewports;
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const currentData = layout.viewports[activeViewportIndex];
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if (currentData && currentData.plugin === 'vtk') {
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// TODO: I was storing/pulling this from Redux but ran into weird issues
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if (apis[activeViewportIndex]) {
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return apis[activeViewportIndex];
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}
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}
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const displaySet = viewportSpecificData[activeViewportIndex];
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let api;
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if (!api) {
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try {
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api = await setViewportToVTK(
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displaySet,
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activeViewportIndex,
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layout,
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viewportSpecificData
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);
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} catch (error) {
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throw new Error(error);
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}
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}
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return api;
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}
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function _setView(api, sliceNormal, viewUp) {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const renderer = api.genericRenderWindow.getRenderer();
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const camera = renderer.getActiveCamera();
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const istyle = renderWindow.getInteractor().getInteractorStyle();
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istyle.setSliceNormal(...sliceNormal);
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camera.setViewUp(...viewUp);
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renderWindow.render();
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}
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function switchMPRInteractors(api, istyle) {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const renderer = api.genericRenderWindow.getRenderer();
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const camera = renderer.getActiveCamera();
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const currentIStyle = renderWindow.getInteractor().getInteractorStyle();
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let currentNormal;
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if (currentIStyle.getSliceNormal && istyle.getSliceNormal) {
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currentNormal = currentIStyle.getSliceNormal();
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}
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let currentSlabThickness;
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if (currentIStyle.getSlabThickness && istyle.getSlabThickness) {
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currentSlabThickness = currentIStyle.getSlabThickness();
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}
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renderWindow.getInteractor().setInteractorStyle(istyle);
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// TODO: Not sure why this is required the second time this function is called
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istyle.setInteractor(renderWindow.getInteractor());
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if (istyle.getVolumeMapper() !== api.volumes[0]) {
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if (currentNormal) {
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istyle.setSliceNormal(currentNormal);
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}
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if (currentSlabThickness) {
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istyle.setSlabThickness(currentSlabThickness);
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}
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istyle.setVolumeMapper(api.volumes[0]);
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}
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}
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const actions = {
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axial: async ({ viewports }) => {
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const api = await _getActiveViewportVTKApi(viewports);
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apis[viewports.activeViewportIndex] = api;
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_setView(api, [0, 0, 1], [0, -1, 0]);
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},
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sagittal: async ({ viewports }) => {
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const api = await _getActiveViewportVTKApi(viewports);
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apis[viewports.activeViewportIndex] = api;
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_setView(api, [1, 0, 0], [0, 0, 1]);
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},
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coronal: async ({ viewports }) => {
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const api = await _getActiveViewportVTKApi(viewports);
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apis[viewports.activeViewportIndex] = api;
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_setView(api, [0, 1, 0], [0, 0, 1]);
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},
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enableRotateTool: () => {
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apis.forEach(api => {
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const istyle = vtkInteractorStyleMPRSlice.newInstance();
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switchMPRInteractors(api, istyle);
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});
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},
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enableCrosshairsTool: () => {
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apis.forEach((api, index) => {
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const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
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switchMPRInteractors(api, istyle);
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istyle.setCallback(getCrosshairCallbackForIndex(index));
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});
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},
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enableLevelTool: () => {
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apis.forEach(api => {
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const istyle = vtkInteractorStyleMPRWindowLevel.newInstance();
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switchMPRInteractors(api, istyle);
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});
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},
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setSlabThickness: slabThickness => {
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currentSlabThickness = slabThickness;
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apis.forEach(api => {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const istyle = renderWindow.getInteractor().getInteractorStyle();
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if (istyle.setSlabThickness) {
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istyle.setSlabThickness(currentSlabThickness);
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// TODO: Do this inside the interactors in a setSlabThickness function instead
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const renderer = api.genericRenderWindow.getRenderer();
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const camera = renderer.getActiveCamera();
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const dist = camera.getDistance();
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const near = dist - currentSlabThickness / 2;
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const far = dist + currentSlabThickness / 2;
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camera.setClippingRange(near, far);
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}
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renderWindow.render();
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});
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},
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changeSlabThickness: ({ change }) => {
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currentSlabThickness += change;
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currentSlabThickness = Math.max(currentSlabThickness, 0.1);
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apis.forEach(api => {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const istyle = renderWindow.getInteractor().getInteractorStyle();
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if (istyle.setSlabThickness) {
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istyle.setSlabThickness(currentSlabThickness);
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}
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renderWindow.render();
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});
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},
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setBlendMode: ({ blendMode }) => {
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apis.forEach(api => {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const istyle = renderWindow.getInteractor().getInteractorStyle();
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api.volumes[0].getMapper().setBlendMode(blendMode);
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renderWindow.render();
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});
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},
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mpr2d: async ({ viewports }) => {
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const displaySet =
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viewports.viewportSpecificData[viewports.activeViewportIndex];
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let apiByViewport;
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try {
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apiByViewport = await setMPRLayout(displaySet);
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} catch (error) {
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throw new Error(error);
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}
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apis = apiByViewport;
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/*const rgbTransferFunction = apiByViewport[0].volumes[0]
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.getProperty()
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.getRGBTransferFunction(0);
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rgbTransferFunction.onModified(() => {
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apiByViewport.forEach(a => {
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const renderWindow = a.genericRenderWindow.getRenderWindow();
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renderWindow.render();
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});
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});*/
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apiByViewport.forEach((api, index) => {
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const renderWindow = api.genericRenderWindow.getRenderWindow();
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const renderer = api.genericRenderWindow.getRenderer();
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const camera = renderer.getActiveCamera();
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const istyle = vtkInteractorStyleMPRCrosshairs.newInstance();
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renderWindow.getInteractor().setInteractorStyle(istyle);
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istyle.setVolumeMapper(api.volumes[0]);
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istyle.setCallback(getCrosshairCallbackForIndex(index));
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const svgWidgetManager = vtkSVGWidgetManager.newInstance();
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svgWidgetManager.setRenderer(renderer);
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svgWidgetManager.setScale(1);
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const crosshairsWidget = vtkSVGCrosshairsWidget.newInstance();
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svgWidgetManager.addWidget(crosshairsWidget);
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svgWidgetManager.render();
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api.svgWidgetManager = svgWidgetManager;
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api.svgWidgets = {
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crosshairsWidget,
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};
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switch (index) {
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default:
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case 0:
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//Axial
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istyle.setSliceNormal(0, 0, 1);
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camera.setViewUp(0, -1, 0);
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break;
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case 1:
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// sagittal
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istyle.setSliceNormal(1, 0, 0);
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camera.setViewUp(0, 0, 1);
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break;
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case 2:
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// Coronal
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istyle.setSliceNormal(0, 1, 0);
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camera.setViewUp(0, 0, 1);
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break;
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}
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renderWindow.render();
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});
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},
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};
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window.vtkActions = actions;
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const definitions = {
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axial: {
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commandFn: actions.axial,
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storeContexts: ['viewports'],
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options: {},
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},
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coronal: {
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commandFn: actions.coronal,
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storeContexts: ['viewports'],
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options: {},
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},
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sagittal: {
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commandFn: actions.sagittal,
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storeContexts: ['viewports'],
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options: {},
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},
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enableRotateTool: {
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commandFn: actions.enableRotateTool,
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storeContexts: [],
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options: {},
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},
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enableCrosshairsTool: {
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commandFn: actions.enableCrosshairsTool,
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storeContexts: [],
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options: {},
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},
|
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enableLevelTool: {
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commandFn: actions.enableLevelTool,
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storeContexts: [],
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options: {},
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},
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setBlendModeToComposite: {
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commandFn: actions.setBlendMode,
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storeContexts: [],
|
||||
options: { blendMode: BlendMode.COMPOSITE_BLEND },
|
||||
},
|
||||
setBlendModeToMaximumIntensity: {
|
||||
commandFn: actions.setBlendMode,
|
||||
storeContexts: [],
|
||||
options: { blendMode: BlendMode.MAXIMUM_INTENSITY_BLEND },
|
||||
},
|
||||
setBlendModeToMinimumIntensity: {
|
||||
commandFn: actions.setBlendMode,
|
||||
storeContexts: [],
|
||||
options: { blendMode: BlendMode.MINIMUM_INTENSITY_BLEND },
|
||||
},
|
||||
setBlendModeToAverageIntensity: {
|
||||
commandFn: actions.setBlendMode,
|
||||
storeContexts: [],
|
||||
options: { blendMode: BlendMode.AVERAGE_INTENSITY_BLEND },
|
||||
},
|
||||
setSlabThickness: {
|
||||
// TODO: How do we pass in a function argument?
|
||||
commandFn: actions.setSlabThickness,
|
||||
storeContexts: [],
|
||||
options: {},
|
||||
},
|
||||
increaseSlabThickness: {
|
||||
commandFn: actions.changeSlabThickness,
|
||||
storeContexts: [],
|
||||
options: {
|
||||
change: 3,
|
||||
},
|
||||
},
|
||||
decreaseSlabThickness: {
|
||||
commandFn: actions.changeSlabThickness,
|
||||
storeContexts: [],
|
||||
options: {
|
||||
change: -3,
|
||||
},
|
||||
},
|
||||
mpr2d: {
|
||||
commandFn: actions.mpr2d,
|
||||
storeContexts: ['viewports'],
|
||||
options: {},
|
||||
context: 'VIEWER',
|
||||
},
|
||||
};
|
||||
|
||||
export default {
|
||||
definitions,
|
||||
defaultContext: 'ACTIVE_VIEWPORT::VTK',
|
||||
};
|
||||
Reference in new issue
Block a user