ohif-viewer/extensions/dicom-microscopy/src/index.tsx

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feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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import { id } from './id';
import React, { Suspense, useMemo } from 'react';
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
import getPanelModule from './getPanelModule';
import getCommandsModule from './getCommandsModule';
import { Types } from '@ohif/core';
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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import { useViewportGrid } from '@ohif/ui';
import getDicomMicroscopySopClassHandler from './DicomMicroscopySopClassHandler';
import getDicomMicroscopySRSopClassHandler from './DicomMicroscopySRSopClassHandler';
import MicroscopyService from './services/MicroscopyService';
import { useResizeDetector } from 'react-resize-detector';
import debounce from 'lodash.debounce';
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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const Component = React.lazy(() => {
return import('./DicomMicroscopyViewport');
});
const MicroscopyViewport = props => {
return (
<Suspense fallback={<div>Loading...</div>}>
<Component {...props} />
</Suspense>
);
};
/**
* You can remove any of the following modules if you don't need them.
*/
const extension: Types.Extensions.Extension = {
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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/**
* Only required property. Should be a unique value across all extensions.
* You ID can be anything you want, but it should be unique.
*/
id,
async preRegistration({ servicesManager }) {
servicesManager.registerService(MicroscopyService.REGISTRATION(servicesManager));
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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},
/**
* ViewportModule should provide a list of viewports that will be available in OHIF
* for Modes to consume and use in the viewports. Each viewport is defined by
* {name, component} object. Example of a viewport module is the CornerstoneViewport
* that is provided by the Cornerstone extension in OHIF.
*/
getViewportModule({ servicesManager, extensionManager, commandsManager }) {
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
/**
*
* @param props {*}
* @param props.displaySets
* @param props.viewportId
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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* @param props.viewportLabel
* @param props.dataSource
* @param props.viewportOptions
* @param props.displaySetOptions
* @returns
*/
const ExtendedMicroscopyViewport = props => {
const { viewportOptions } = props;
const [viewportGrid, viewportGridService] = useViewportGrid();
const { activeViewportId } = viewportGrid;
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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const displaySetsKey = useMemo(() => {
return props.displaySets.map(ds => ds.displaySetInstanceUID).join('-');
}, [props.displaySets]);
const onResize = debounce(() => {
const { microscopyService } = servicesManager.services;
const managedViewer = microscopyService.getAllManagedViewers();
if (managedViewer && managedViewer.length > 0) {
managedViewer[0].viewer.resize();
}
}, 100);
const { ref: resizeRef } = useResizeDetector({
onResize,
handleHeight: true,
handleWidth: true,
});
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
return (
<MicroscopyViewport
key={displaySetsKey}
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
servicesManager={servicesManager}
extensionManager={extensionManager}
commandsManager={commandsManager}
activeViewportId={activeViewportId}
setViewportActive={(viewportId: string) => {
viewportGridService.setActiveViewportId(viewportId);
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
}}
viewportData={viewportOptions}
resizeRef={resizeRef}
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
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{...props}
/>
);
};
return [
{
name: 'microscopy-dicom',
component: ExtendedMicroscopyViewport,
},
];
},
getToolbarModule({ servicesManager }) {
return [
{
name: 'evaluate.microscopyTool',
evaluate: ({ button }) => {
const { microscopyService } = servicesManager.services;
const activeInteractions = microscopyService.getActiveInteractions();
if (!activeInteractions) {
return false;
}
const isPrimaryActive = activeInteractions.find(interactions => {
const sameMouseButton = interactions[1].bindings.mouseButtons.includes('left');
if (!sameMouseButton) {
return false;
}
const notDraw = interactions[0] !== 'draw';
// there seems to be a custom logic for draw tool for some reason
return notDraw
? interactions[0] === button.id
: interactions[1].geometryType === button.id;
});
return {
disabled: false,
className: isPrimaryActive
? '!text-black bg-primary-light'
: '!text-common-bright hover:!bg-primary-dark hover:!text-primary-light',
// Todo: isActive right now is used for nested buttons where the primary
// button needs to be fully rounded (vs partial rounded) when active
// otherwise it does not have any other use
isActive: isPrimaryActive,
};
},
},
];
},
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
/**
* SopClassHandlerModule should provide a list of sop class handlers that will be
* available in OHIF for Modes to consume and use to create displaySets from Series.
* Each sop class handler is defined by a { name, sopClassUids, getDisplaySetsFromSeries}.
* Examples include the default sop class handler provided by the default extension
*/
getSopClassHandlerModule({ servicesManager, commandsManager, extensionManager }) {
feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
return [
getDicomMicroscopySopClassHandler({
servicesManager,
extensionManager,
}),
getDicomMicroscopySRSopClassHandler({
servicesManager,
extensionManager,
}),
];
},
getPanelModule,
getCommandsModule,
};
export default extension;