158 lines
4.8 KiB
JavaScript
158 lines
4.8 KiB
JavaScript
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/**
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* Checks if a series is reconstructable to a 3D volume.
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*
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* @param {Object} series The `OHIFSeriesMetadata` object.
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* @param {Object[]} instances The `OHIFInstanceMetadata` object
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*/
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export default function isDisplaySetReconstructable(series, instances) {
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// Can't reconstruct if we only have one image.
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const modality = series._data.modality; // TODO -> Is there a better way to get this?
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const isMultiframe = instances[0].getRawValue('x00280008') > 1;
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if (!constructableModalities.includes(modality)) {
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return { value: false };
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}
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if (!isMultiframe && instances.length === 1) {
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return { values: false };
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}
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if (isMultiframe) {
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return processMultiframe(instances[0]);
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} else {
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return processSingleframe(instances);
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}
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}
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function processMultiframe(instance) {
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//TODO: deal with multriframe checks! return true for now.
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return { value: true };
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}
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function processSingleframe(instances) {
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const firstImage = instances[0];
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const firstImageRows = firstImage.getTagValue('x00280010');
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const firstImageColumns = firstImage.getTagValue('x00280011');
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const firstImageSamplesPerPixel = firstImage.getTagValue('x00280002');
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// Note: No need to unpack iop, can compare string form.
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const firstImageOrientationPatient = firstImage.getTagValue('x00200037');
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// Can't reconstruct if we:
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// -- Have a different dimensions within a displaySet.
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// -- Have a different number of components within a displaySet.
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// -- Have different orientations within a displaySet.
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for (let i = 1; i < instances.length; i++) {
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const instance = instances[i];
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const rows = instance.getTagValue('x00280010');
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const columns = instance.getTagValue('x00280011');
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const samplesPerPixel = instance.getTagValue('x00280002');
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const imageOrientationPatient = instance.getTagValue('x00200037');
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if (
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rows !== firstImageRows ||
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columns !== firstImageColumns ||
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samplesPerPixel !== firstImageSamplesPerPixel ||
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imageOrientationPatient !== firstImageOrientationPatient
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) {
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return { value: false };
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}
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}
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let missingFrames = 0;
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// Check if frame spacing is approximately equal within a tolerance.
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// If spacing is on a uniform grid but we are missing frames,
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// Allow reconstruction, but pass back the number of missing frames.
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if (instances.length > 2) {
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const firstIpp = _getImagePositionPatient(firstImage);
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const lastIpp = _getImagePositionPatient(instances[instances.length - 1]);
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const averageSpacingBetweenFrames =
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_getPerpendicularDistance(firstIpp, lastIpp) / (instances.length - 1);
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let previousIpp = firstIpp;
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for (let i = 1; i < instances.length; i++) {
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const instance = instances[i];
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const ipp = _getImagePositionPatient(instance);
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const spacingBetweenFrames = _getPerpendicularDistance(ipp, previousIpp);
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const spacingIssue = _getSpacingIssue(
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spacingBetweenFrames,
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averageSpacingBetweenFrames
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);
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if (spacingIssue) {
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const issue = spacingIssue.issue;
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if (issue === reconstructionIssues.MISSING_FRAMES) {
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missingFrames += spacingIssue.missingFrames;
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} else if (issue === reconstructionIssues.IRREGULAR_SPACING) {
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return { value: false };
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}
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}
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previousIpp = ipp;
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}
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}
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return { value: true, missingFrames };
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}
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// TODO: Is 10% a reasonable tolerance for spacing?
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const tolerance = 0.1;
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/**
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* Checks for spacing issues.
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*
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* @param {number} spacing The spacing between two frames.
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* @param {number} averageSpacing The average spacing between all frames.
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*
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* @returns {Object} An object containing the issue and extra information if necessary.
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*/
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function _getSpacingIssue(spacing, averageSpacing) {
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const equalWithinTolerance =
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Math.abs(spacing - averageSpacing) < averageSpacing * tolerance;
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if (equalWithinTolerance) {
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return;
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}
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const multipleOfAverageSpacing = spacing / averageSpacing;
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const numberOfSpacings = Math.round(multipleOfAverageSpacing);
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const errorForEachSpacing =
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Math.abs(spacing - numberOfSpacings * averageSpacing) / numberOfSpacings;
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if (errorForEachSpacing < tolerance * averageSpacing) {
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return {
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issue: reconstructionIssues.MISSING_FRAMES,
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missingFrames: numberOfSpacings - 1,
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};
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}
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return { issue: reconstructionIssues.IRREGULAR_SPACING };
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}
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function _getImagePositionPatient(instance) {
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return instance
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.getTagValue('x00200032')
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.split('\\')
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.map(element => Number(element));
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}
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function _getPerpendicularDistance(a, b) {
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return Math.sqrt(
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Math.pow(a[0] - b[0], 2) +
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Math.pow(a[1] - b[1], 2) +
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Math.pow(a[2] - b[2], 2)
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);
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}
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const constructableModalities = ['MR', 'CT', 'PT', 'NM'];
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const reconstructionIssues = {
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MISSING_FRAMES: 'missingframes',
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IRREGULAR_SPACING: 'irregularspacing',
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};
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