ohif-viewer/platform/core/src/utils/StackManager.js

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Chore/kill yalc with fire (#629) * init * more shifting * Move @babel dependencies up to workspace root * Begin updating dependent libraries to use sync'd webpack builds w/ watches * Commit changes before a long weekend * Split packages into platform and extensions * Consolidate how/where we specify file/module type entrypoints * Make it possible to pass in extensions as App props * Resolve viewer's modules * Target for UMD bundle * Add Webpack Stylus loader * Provide WebPack build options for microscopy, vtk, and ui * Better entrypoint for extensions * Push changes up to switch PCs * Fix ESM symlink build for Viewers * Shift docs to root * Specify additional lerna config props * Begin providing basic readme info * Rename example extension folder * Shift links to bottom of doc * First attempt at a netlify deploy preview * Attempt to fix deploy preview build * push workspace enabled to initial command; remove second yarn install; use npx to call gitbook cli commands * Try to use global gitbook-cli * Export node_modules path * More agressive with modifying PATH * Follow deploy log output advice * try again to set bin path * Try swapping bash with a new shell * Try bash -l instead of exec bash * Annd let's try again * and again * We may have figured it out johnny, boy * We need to pull cornerstone-wado-image-loader files from hoisted node_modules * Attempt to fix ticks/escapes * Change copy syntax; try running tests on viewers from root for circleci * Lower version to match circleci image * Try alternative jest-canvas-mock location and version file syntax * Run version command instead of calling node directly * Try alternative jest transform * Set path and enable workspaces * Add codecov flags * Use cpx so our copying finishes? * Get all platform unit tests to run * Run and report individually and in parallel * Try once relying on codecov yaml to split w/ flags * Add projects to split by flags * Generate separate reports * Trigger codecov after everything has finished running; these may not support flags * Use recommended flags from issue comments for codecov * Fix typo * Remove clear flag * Shift back to calling codecov from root * Generate example for codecov issue * Try fixing paths * Simplify * Try using codecov orb * Bump circleci version * Upload core and viewer * Use full string paths * Remove individual codecov calls * Fix dir * Combine files before upload * Escape anchors * tryfix syntax * Escape string literal * Combine lines to reduce path * long paths * Use home alias * Fix filename * Try to see the contents of our cat'd file * Also upload `core` * Try running with aliased folder * Fix path; split PR and Merge unit tests into separate jobs * Set default threshold * Fix typo * Changing to scoped package names * Adding note * Catch more updates * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.0 - @ohif/extension-dicom-html@0.0.4-alpha.0 - @ohif/extension-dicom-microscopy@0.0.9-alpha.0 - @ohif/extension-dicom-pdf@0.0.8-alpha.0 - @ohif/extension-vtk@0.1.4-alpha.0 - @ohif/core@0.11.1-alpha.0 - @ohif/i18n@0.2.3-alpha.0 - @ohif/ui@0.2.18-alpha.0 - @ohif/viewer@0.0.22-alpha.0 * Clean up primary readme * Support for dev and dev:* commands * Shift build command; satisfy default PWA build * Remove old scripts * Clean up UI to set webpack scripts * Tidy up project links * Clean duplicate code in UI project * Update UI project's docs * Clean up ui and i18n config * Reduce duplicate code in `@ohif/core` * Fix @ohif/ui versions * bump @ohif/core versions * Redux testkit dep * Remove unused/duplicate config files for projects/packages * ohif-core --> @ohif/core * Safer publish command * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.1 - @ohif/extension-dicom-html@0.0.4-alpha.1 - @ohif/extension-dicom-microscopy@0.0.9-alpha.1 - @ohif/extension-dicom-pdf@0.0.8-alpha.1 - @ohif/extension-vtk@0.1.4-alpha.1 - @ohif/core@0.11.1-alpha.1 - @ohif/i18n@0.2.3-alpha.1 - @ohif/ui@0.2.18-alpha.1 - @ohif/viewer@0.0.22-alpha.1 * test version bump * Add global prettier config * chore(release): publish %s [skip ci] - @ohif/viewer@0.0.22-alpha.2 * test lerna publish * Update package.jsons * Fix build scripts * catch changes * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.2 - @ohif/extension-dicom-html@0.0.4-alpha.2 - @ohif/extension-dicom-microscopy@0.0.9-alpha.2 - @ohif/extension-dicom-pdf@0.0.8-alpha.2 - @ohif/extension-vtk@0.1.4-alpha.2 - @ohif/core@0.11.1-alpha.2 - @ohif/i18n@0.2.3-alpha.2 - @ohif/ui@0.2.18-alpha.2 - @ohif/viewer@0.0.22-alpha.3 * fix eslint issues caused by eslint 6 and our react-app config * Publish with canary tag * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.3 - @ohif/extension-dicom-html@0.0.4-alpha.3 - @ohif/extension-dicom-microscopy@0.0.9-alpha.3 - @ohif/extension-dicom-pdf@0.0.8-alpha.3 - @ohif/extension-vtk@0.1.4-alpha.3 - @ohif/core@0.11.1-alpha.3 - @ohif/i18n@0.2.3-alpha.3 - @ohif/ui@0.2.18-alpha.3 - @ohif/viewer@0.0.22-alpha.4 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.4 - @ohif/extension-dicom-html@0.0.4-alpha.4 - @ohif/extension-dicom-microscopy@0.0.9-alpha.4 - @ohif/extension-dicom-pdf@0.0.8-alpha.4 - @ohif/extension-vtk@0.1.4-alpha.4 - @ohif/core@0.11.1-alpha.4 - @ohif/i18n@0.2.3-alpha.4 - @ohif/ui@0.2.18-alpha.4 - @ohif/viewer@0.0.22-alpha.5 * Simplify build * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.5 - @ohif/extension-dicom-html@0.0.4-alpha.5 - @ohif/extension-dicom-microscopy@0.0.9-alpha.5 - @ohif/extension-dicom-pdf@0.0.8-alpha.5 - @ohif/extension-vtk@0.1.4-alpha.5 - @ohif/core@0.11.1-alpha.5 - @ohif/i18n@0.2.3-alpha.5 - @ohif/ui@0.2.18-alpha.5 - @ohif/viewer@0.0.22-alpha.6 * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.6 - @ohif/extension-dicom-html@0.0.4-alpha.6 - @ohif/extension-dicom-microscopy@0.0.9-alpha.6 - @ohif/extension-dicom-pdf@0.0.8-alpha.6 - @ohif/extension-vtk@0.1.4-alpha.6 - @ohif/core@0.11.1-alpha.6 - @ohif/i18n@0.2.3-alpha.6 - @ohif/ui@0.2.18-alpha.6 - @ohif/viewer@0.0.22-alpha.7 * Split version and publish * chore(release): publish %s [skip ci] - @ohif/extension-cornerstone@0.0.39-alpha.7 - @ohif/extension-dicom-html@0.0.4-alpha.7 - @ohif/extension-dicom-microscopy@0.0.9-alpha.7 - @ohif/extension-dicom-pdf@0.0.8-alpha.7 - @ohif/extension-vtk@0.1.4-alpha.7 - @ohif/core@0.11.1-alpha.7 - @ohif/i18n@0.2.3-alpha.7 - @ohif/ui@0.2.18-alpha.7 - @ohif/viewer@0.0.22-alpha.8 * Try simplify netlify build * react-viewerbase --> @ohif/ui * add test for stylus loader * Try new way to specify publish path * Use an output folder that won't be ignored * Try move command * fiddle with paths * Dig for some information * Make sure we're in root for our commands * Remove discovery * Setup script-tag example * Fix typo * Move config folder * Update cornerstone extension to use shared/root webpack configs * capture changes * Update extension webpack configs * Don't check in docz output * Fix babel runtime resolution issue * Simplify ui build steps * Push in progress * Shift directories * Get viewer dev path to work * Fix viewer commonjs build * Fix build pwa config for viewers * Make sure our package specific command can be called from root * Update notes * Fix imports and misc. merge notes * Bump wado-image-loader version * Switch up commands to remove webworkers copy * Fix CI config * Fix more broken package references * Add react-dropzone * Persist so e2e test can use * Fix lockfile * Use cypress orb to simplify CI * Fix config * Try again * Install yarn latest for orb * Install yarn a different way * Wait on correct port * Run tests in viewer project * Fix cypress config * Make Cypress happier - use default location * Simplify e2e testing * Capture UI changes since fork * Catch core up * Grab latest deps after merge * Fix broken import * Make sure cornerstone-wado-image-loader resolves to 3+ * Note regarding orbs * Fix refresh on 404 routes * Fix odd error for cornerstone-wado-image-loader * Different target for UMD * Simplify dev script * Try to get fancy with netlify output * Let's do it again * Try to fix measurementTools issue * See if we can get our lerna magic to work on merge to monorepo branch
2019-08-13 21:36:46 +02:00
import OHIFError from '../classes/OHIFError.js';
import getImageId from './getImageId';
let stackMap = {};
let configuration = {};
let stackManagerMetaDataProvider;
const stackUpdatedCallbacks = [];
/**
* Loop through the current series and add metadata to the
* Cornerstone meta data provider. This will be used to fill information
* into the viewport overlays, and to calculate reference lines and orientation markers
* @param {Object} stackMap stackMap object
* @param {Object} study Study object
* @param {Object} displaySet The set of images to make the stack from
* @return {Array} Array with image IDs
*/
function createAndAddStack(
stackMap,
study,
displaySet,
stackUpdatedCallbacks,
metadataProvider
) {
const images = displaySet.images;
if (!images) {
return;
}
const numImages = images.length;
const imageIds = [];
let imageId;
displaySet.images.forEach((instance, imageIndex) => {
const image = instance.getData();
const metaData = {
instance: image, // in this context, instance will be the data of the InstanceMetadata object...
series: displaySet, // TODO: Check this
study,
numImages,
imageIndex: imageIndex + 1,
};
const numberOfFrames = image.numberOfFrames;
if (numberOfFrames > 1) {
for (let i = 0; i < numberOfFrames; i++) {
metaData.frameNumber = i;
imageId = getImageId(image, i);
imageIds.push(imageId);
metadataProvider.addMetadata(imageId, metaData);
}
} else {
metaData.frameNumber = 1;
imageId = getImageId(image);
imageIds.push(imageId);
metadataProvider.addMetadata(imageId, metaData);
}
});
const stack = {
studyInstanceUid: study.studyInstanceUid,
displaySetInstanceUid: displaySet.displaySetInstanceUid,
imageIds,
frameRate: displaySet.frameRate,
isClip: displaySet.isClip,
};
stackMap[displaySet.displaySetInstanceUid] = stack;
return stack;
}
configuration = {
createAndAddStack,
};
/**
* This object contains all the functions needed for interacting with the stack manager.
* Generally, findStack is the only function used. If you want to know when new stacks
* come in, you can register a callback with addStackUpdatedCallback.
*/
const StackManager = {
setMetadataProvider(provider) {
stackManagerMetaDataProvider = provider;
},
/**
* Removes all current stacks
*/
clearStacks() {
stackMap = {};
},
/**
* Create a stack from an image set, as well as add in the metadata on a per image bases.
* @param study The study who's metadata will be added
* @param displaySet The set of images to make the stack from
* @return {Array} Array with image IDs
*/
makeAndAddStack(study, displaySet) {
if (!stackManagerMetaDataProvider) {
throw new Error(
'Please call StackManager.setMetadataProvider(provider) first.'
);
}
return configuration.createAndAddStack(
stackMap,
study,
displaySet,
stackUpdatedCallbacks,
stackManagerMetaDataProvider
);
},
/**
* Find a stack from the currently created stacks.
* @param displaySetInstanceUid The UID of the stack to find.
* @returns {*} undefined if not found, otherwise the stack object is returned.
*/
findStack(displaySetInstanceUid) {
return stackMap[displaySetInstanceUid];
},
/**
* Find a stack or reate one if it has not been created yet
* @param study The study who's metadata will be added
* @param displaySet The set of images to make the stack from
* @return {Array} Array with image IDs
*/
findOrCreateStack(study, displaySet) {
let stack = this.findStack(displaySet.displaySetInstanceUid);
if (!stack || !stack.imageIds) {
stack = this.makeAndAddStack(study, displaySet);
}
return stack;
},
/**
* Gets the underlying map of displaySetInstanceUid to stack object.
* WARNING: Do not change this object. It directly affects the manager.
* @returns {{}} map of displaySetInstanceUid -> stack.
*/
getAllStacks() {
return stackMap;
},
/**
* Adds in a callback to be called on a stack being added / updated.
* @param callback must accept at minimum one argument,
* which is the stack that was added / updated.
*/
addStackUpdatedCallback(callback) {
if (typeof callback !== 'function') {
throw new OHIFError('callback must be provided as a function');
}
stackUpdatedCallbacks.push(callback);
},
/**
* Return configuration
*/
getConfiguration() {
return configuration;
},
/**
* Set configuration, in order to provide compatibility
* with other systems by overriding this functions
* @param {Object} config object with functions to be overrided
*
* For now, only makeAndAddStack can be overrided
*/
setConfiguration(config) {
configuration = config;
},
};
export { StackManager };
export default StackManager;