ohif-viewer/platform/app/src/routes/Mode/Mode.tsx

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import React, { useEffect, useState, useRef } from 'react';
import { useParams, useLocation, useNavigate } from 'react-router';
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import PropTypes from 'prop-types';
import { utils } from '@ohif/core';
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import { DragAndDropProvider, ImageViewerProvider } from '@ohif/ui';
import { useSearchParams } from '@hooks';
import { useAppConfig } from '@state';
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import ViewportGrid from '@components/ViewportGrid';
import Compose from './Compose';
import { history } from '../../utils/history';
import loadModules from '../../pluginImports';
import { defaultRouteInit } from './defaultRouteInit';
import { updateAuthServiceAndCleanUrl } from './updateAuthServiceAndCleanUrl';
const { getSplitParam } = utils;
export default function ModeRoute({
mode,
dataSourceName,
extensionManager,
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servicesManager,
feat: cornerstone3D stack and volume viewports (#2787) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
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commandsManager,
hotkeysManager,
}: withAppTypes) {
const [appConfig] = useAppConfig();
// Parse route params/querystring
const location = useLocation();
// The react router DOM placeholder map (see https://reactrouter.com/en/main/hooks/use-params).
const params = useParams();
// The URL's query search parameters where the keys casing is maintained
const query = useSearchParams();
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mode?.onModeInit?.({
servicesManager,
extensionManager,
commandsManager,
appConfig,
query,
});
// The URL's query search parameters where the keys are all lower case.
const lowerCaseSearchParams = useSearchParams({ lowerCaseKeys: true });
const [studyInstanceUIDs, setStudyInstanceUIDs] = useState(null);
const [refresh, setRefresh] = useState(false);
const [ExtensionDependenciesLoaded, setExtensionDependenciesLoaded] = useState(false);
const layoutTemplateData = useRef(false);
const locationRef = useRef(null);
const isMounted = useRef(false);
// Expose the react router dom navigation.
history.navigate = useNavigate();
if (location !== locationRef.current) {
layoutTemplateData.current = null;
locationRef.current = location;
}
const { displaySetService, panelService, hangingProtocolService, userAuthenticationService } =
servicesManager.services;
const { extensions, sopClassHandlers, hotkeys: hotkeyObj, hangingProtocol } = mode;
const runTimeHangingProtocolId = lowerCaseSearchParams.get('hangingprotocolid');
const token = lowerCaseSearchParams.get('token');
if (token) {
updateAuthServiceAndCleanUrl(token, location, userAuthenticationService);
}
// Preserve the old array interface for hotkeys
const hotkeys = Array.isArray(hotkeyObj) ? hotkeyObj : hotkeyObj?.hotkeys;
const hotkeyName = hotkeyObj?.name || 'hotkey-definitions';
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// An undefined dataSourceName implies that the active data source that is already set in the ExtensionManager should be used.
if (dataSourceName !== undefined) {
extensionManager.setActiveDataSource(dataSourceName);
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}
const dataSource = extensionManager.getActiveDataSource()[0];
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// Only handling one route per mode for now
const route = mode.routes[0];
useEffect(() => {
const loadExtensions = async () => {
const loadedExtensions = await loadModules(Object.keys(extensions));
for (const extension of loadedExtensions) {
const { id: extensionId } = extension;
if (extensionManager.registeredExtensionIds.indexOf(extensionId) === -1) {
await extensionManager.registerExtension(extension);
}
}
setExtensionDependenciesLoaded(true);
};
loadExtensions();
}, []);
useEffect(() => {
// Preventing state update for unmounted component
isMounted.current = true;
return () => {
isMounted.current = false;
};
}, []);
useEffect(() => {
if (!ExtensionDependenciesLoaded) {
return;
}
// Todo: this should not be here, data source should not care about params
const initializeDataSource = async (params, query) => {
await dataSource.initialize({
params,
query,
});
setStudyInstanceUIDs(dataSource.getStudyInstanceUIDs({ params, query }));
};
initializeDataSource(params, query);
return () => {
layoutTemplateData.current = null;
};
}, [location, ExtensionDependenciesLoaded]);
useEffect(() => {
if (!ExtensionDependenciesLoaded || !studyInstanceUIDs?.length) {
return;
}
const retrieveLayoutData = async () => {
const layoutData = await route.layoutTemplate({
location,
servicesManager,
studyInstanceUIDs,
});
if (isMounted.current) {
const { leftPanels = [], rightPanels = [], ...layoutProps } = layoutData.props;
panelService.reset();
panelService.addPanels(panelService.PanelPosition.Left, leftPanels);
panelService.addPanels(panelService.PanelPosition.Right, rightPanels);
// layoutProps contains all props but leftPanels and rightPanels
layoutData.props = layoutProps;
layoutTemplateData.current = layoutData;
setRefresh(!refresh);
}
};
if (Array.isArray(studyInstanceUIDs) && studyInstanceUIDs[0]) {
retrieveLayoutData();
}
return () => {
layoutTemplateData.current = null;
};
}, [studyInstanceUIDs, ExtensionDependenciesLoaded]);
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useEffect(() => {
if (!hotkeys || !ExtensionDependenciesLoaded || !studyInstanceUIDs?.length) {
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return;
}
hotkeysManager.setDefaultHotKeys(hotkeys);
const userPreferredHotkeys = JSON.parse(localStorage.getItem(hotkeyName));
if (userPreferredHotkeys?.length) {
hotkeysManager.setHotkeys(userPreferredHotkeys, hotkeyName);
} else {
hotkeysManager.setHotkeys(hotkeys, hotkeyName);
}
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return () => {
hotkeysManager.destroy();
};
}, [ExtensionDependenciesLoaded, hotkeys, studyInstanceUIDs]);
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useEffect(() => {
if (!layoutTemplateData.current || !ExtensionDependenciesLoaded || !studyInstanceUIDs?.length) {
return;
}
const setupRouteInit = async () => {
// TODO: For some reason this is running before the Providers
// are calling setServiceImplementation
// TODO -> iterate through services.
// Extension
// Add SOPClassHandlers to a new SOPClassManager.
displaySetService.init(extensionManager, sopClassHandlers);
extensionManager.onModeEnter({
servicesManager,
extensionManager,
commandsManager,
appConfig,
});
// use the URL hangingProtocolId if it exists, otherwise use the one
// defined in the mode configuration
const hangingProtocolIdToUse = hangingProtocolService.getProtocolById(
runTimeHangingProtocolId
)
? runTimeHangingProtocolId
: hangingProtocol;
// Sets the active hanging protocols - if hangingProtocol is undefined,
// resets to default. Done before the onModeEnter to allow the onModeEnter
// to perform custom hanging protocol actions
hangingProtocolService.setActiveProtocolIds(hangingProtocolIdToUse);
mode?.onModeEnter({
servicesManager,
extensionManager,
commandsManager,
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appConfig,
});
/**
* The next line should get all the query parameters provided by the URL
* - except the StudyInstanceUIDs - and create an object called filters
* used to filtering the study as the user wants otherwise it will return
* a empty object.
*
* Example:
* const filters = {
* seriesInstanceUID: 1.2.276.0.7230010.3.1.3.1791068887.5412.1620253993.114611
* }
*/
const filters =
Array.from(query.keys()).reduce((acc: Record<string, string>, val: string) => {
const lowerVal = val.toLowerCase();
// Not sure why the case matters here - it doesn't in the URL
if (lowerVal === 'seriesinstanceuids') {
const seriesUIDs = getSplitParam(lowerVal, query);
return {
...acc,
seriesInstanceUID: seriesUIDs,
};
}
return { ...acc, [val]: getSplitParam(lowerVal, query) };
}, {}) ?? {};
let unsubs;
if (route.init) {
unsubs = await route.init(
{
servicesManager,
extensionManager,
hotkeysManager,
studyInstanceUIDs,
dataSource,
filters,
},
hangingProtocolIdToUse
);
}
return defaultRouteInit(
{
servicesManager,
studyInstanceUIDs,
dataSource,
filters,
appConfig,
},
hangingProtocolIdToUse
);
};
let unsubscriptions;
setupRouteInit().then(unsubs => {
unsubscriptions = unsubs;
// Some code may need to run after hanging protocol initialization
// (eg: workflowStepsService initialization on 4D mode)
mode?.onSetupRouteComplete?.({
servicesManager,
extensionManager,
commandsManager,
});
});
return () => {
// The mode.onModeExit must be done first to allow it to store
// information, and must be in a try/catch to ensure subscriptions
// are unsubscribed.
try {
mode?.onModeExit?.({
servicesManager,
extensionManager,
appConfig,
});
} catch (e) {
console.warn('mode exit failure', e);
}
// The unsubscriptions must occur before the extension onModeExit
// in order to prevent exceptions during cleanup caused by spurious events
unsubscriptions.forEach(unsub => {
unsub();
});
// The extension manager must be called after the mode, this is
// expected to cleanup the state to a standard setup.
extensionManager.onModeExit();
};
}, [
mode,
dataSourceName,
location,
ExtensionDependenciesLoaded,
route,
servicesManager,
extensionManager,
hotkeysManager,
studyInstanceUIDs,
refresh,
]);
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if (!studyInstanceUIDs || !layoutTemplateData.current || !ExtensionDependenciesLoaded) {
return null;
}
const ViewportGridWithDataSource = props => {
return ViewportGrid({ ...props, dataSource });
};
const CombinedExtensionsContextProvider = createCombinedContextProvider(
extensionManager,
servicesManager,
commandsManager
);
const getLayoutComponent = props => {
const layoutTemplateModuleEntry = extensionManager.getModuleEntry(
layoutTemplateData.current.id
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);
const LayoutComponent = layoutTemplateModuleEntry.component;
return <LayoutComponent {...props} />;
};
const LayoutComponent = getLayoutComponent({
...layoutTemplateData.current.props,
ViewportGridComp: ViewportGridWithDataSource,
});
return (
<ImageViewerProvider StudyInstanceUIDs={studyInstanceUIDs}>
{CombinedExtensionsContextProvider ? (
<CombinedExtensionsContextProvider>
<DragAndDropProvider>{LayoutComponent}</DragAndDropProvider>
</CombinedExtensionsContextProvider>
) : (
<DragAndDropProvider>{LayoutComponent}</DragAndDropProvider>
)}
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</ImageViewerProvider>
);
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}
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/**
* Creates a combined context provider using the context modules from the extension manager.
* @param {object} extensionManager - The extension manager instance.
* @param {object} servicesManager - The services manager instance.
* @param {object} commandsManager - The commands manager instance.
* @returns {React.Component} - A React component that provides combined contexts to its children.
*/
function createCombinedContextProvider(extensionManager, servicesManager, commandsManager) {
const extensionsContextModules = extensionManager.getModulesByType(
extensionManager.constructor.MODULE_TYPES.CONTEXT
);
if (!extensionsContextModules?.length) {
return;
}
const contextModuleProviders = extensionsContextModules.flatMap(({ module }) => {
return module.map(aContextModule => {
return aContextModule.provider;
});
});
return ({ children }) => {
return Compose({ components: contextModuleProviders, children });
};
}
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ModeRoute.propTypes = {
mode: PropTypes.object.isRequired,
dataSourceName: PropTypes.string,
extensionManager: PropTypes.object,
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servicesManager: PropTypes.object,
hotkeysManager: PropTypes.object,
commandsManager: PropTypes.object,
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};