ohif-viewer/platform/docs/versioned_docs/version-3.0/development/getting-started.md

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feat: cornerstone3D stack and volume viewports (#2787) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: cs3d tools and toolGroups (#20) * add more tools to work with cs3d mode * fix hotkeys * add stack manager usage for stach viewports * add image scrollbar * wip viewport overlay * fix toAnnotation schema for tools * fix the unnecessary size change that triggered resize * hanging protocol improvement to allow unmatched errors * study description matching for hanging protocol * fix the displaysetOptions to work * fix handle the active tool when a new viewport is added * fix separate toolGroups for mode * apply review comments * apply review comments * yarn lock * feat: overlay component (#21) * fix default displayset options * add viewport overlay * apply review comments * feat: loading and orientation indicators (#22) * add loading indicator * add orientation marker initial work * apply review comments * fix: orientation markers (#23) * finished the orientation markers * fix various broken cypress tests * apply review comments * update yarn lock * feat: re-working measurement tracking mode with cornerstone3d (#2805) * feat: cs3d working stack viewport and tools (#19) * Squashed everything * fix weird react issue * fix eslint / prettier stuff * thumbnails work now with cpu rendering * feat: use new loadImageToCanvas in cs3d * make jump to measurement work * fix active thumbnail * fix measurement delete * fix window level presets * remove segmentation and sync groups for now * fix the dicom pdf and dicom video * fix cornerstone window assignment for cypress * apply review comments Co-authored-by: Erik <erik.sweed@gmail.com> * feat: Add Measurement tracking mode with cs3D (#2789) * feat: first render for cornerstone3d tracked viewport * make tool active work * wip for SR extension * renamed dicom sr to cornerstone dicom sr * remove cornerstone from dicom pdf and video * move dicom sr logic to sr extension * feat: Add hydration for the length tool * fix SR display tool for length using cs3d * fix default config * fix: various bugs with sr viewport and tracking * fix promptying to continue tracking for when SR is created * feat: add keep trackign of unique identifiers * fix hydration for same imageIds * feat: Add SR toolGroup creation on modeEnter * feat: remove the need for separate mapper for SR hydration * add SR display for ellipse * handle hydration of elliptical ROI tool * remove cornerstone extension * add arrow mapping * feat: Add ArrowAnnotate SR display and hydration * apply review comments * apply review comments * move viewport labels to the viewportData * apply review comments * fix: integration cypress tests with cornerstone3D and add CINE tool (#2795) * fix: integration cypress tests with cornerstone3D * revert to addOrUpdate as it makes more sense * fix local drag and drop * fix tests * move dicomLoaderService to cornerstone extension * fix various import bugs * fix bug for local PT series * fix various unit tests * bump cs3d versions * add angle and magnify tool * bump dependencies to avoid broken peerDeps * feat: add initial work for capture using cs3d * feat: show annotations on the image capture * feat: add svg layer export * feat: Add CINE Tool * feat: remove unnecessary viewport rendering for cine state changes Co-authored-by: Erik Ziegler <erik.sweed@gmail.com> * docs: modify and improve documentation (#2800) * cleanup docs versionings * feat: Add all version explanations * version docs for 3.0 * wip for changing docs * wip for updated docs * add utility module documentation * fix demo with nohoisting of history * add slides and video to resources * apply review comments * fix: drag and drop SR into SR viewport (#2803) * update yarn lock Co-authored-by: Erik <erik.sweed@gmail.com> * update pathnames to match v3-stable * update the e2e pathname * fix: various bugs with regard to tracking workflow (#2811) * fix: various issues with measurement panel * fix: update default tool style for annotations * fix: annotatoin label getting removed * feat: Add backward compatibility for SR hydration with legacy cornerstone * fix: cursors and ellipse ROI max style * fix: ArrowAnnotate SRDisplay * apply review comments * bump package versions * fix: bugin rehydration of SR * fix: e2e tests * fix active viewport thickness and arrowTool ui * add readme for measurement tracking * use uploaded image for readme * add back images * try to fix e2e test * fix: window level presets hotkeys * Update README.md * update yarn lock * feat: volume api and TMTV mode (#2817) * feat: volumeAPI and TMTV mode * feat: use cs3d cache service to obtain viewportData * wip for volume api * wip: fusion viewport * feat: add blend mode option * wip for image scrollbar * fix drag and drop thumbnail * wip for image scrollbar for voluems * fix: element mismatch bug for scroll * feat: Add image scrollbar to volumes * feat: add syncGroups to volume api * feat: add tmtv mode initial setup * feat: add initial image options for the stack viewports * feat: Add custom load strategy for volume viewports via HP * apply review comments fix: Jump presets cs3d (#2812) * feat: Add JumpPreset to OHIF for Cornerstone3D * fix: accessing viewport service from servicesManager feat: volume API and TMTV mode (#2814) * fix: do not display overlays on mip viewports * feat: add optional disableCommands for toggle buttons * fix: toggleCrossharis * feat: config the crosshairs * feat: add PetSUV Panel for changing metadata * feat: initial work for the rectangleROIThreshold panel * wip: measurement service * roi threshold working * feat: Add displayText to segmentations * feat: add remove segmentation * feat: add csv export * feat: add RT export for annotations in tmtv mode * fix: fusion to use pt in tmtv mode and measuremet mappings * fix: various bugs * apply review comments * apply review comments * feat: add fusion color maps * add readme to tmtv mode * Update README.md * fix: try to fix build * fix unit tests * Update README.md * feat: add about to the panel * fix: changing strategy in roi panel * apply review comments * update package versions * wip for stackPrefetch * fix: cornerstone3d hydration and renaming (#2818) * update readme * renamed cornerstone extension * wip for renaming cornerstone3D variables * wip for renaming cornerstone3D variables * wip for fixing bugs for SR viewport * fix: jumpToMeasurement and initial label after hydration * fix: fileName capitalization * feat: use the new prefetch stack in the cs3d (#2820) * feat: use the new prefetch stack in the cs3d * use viewport scroll api for stack viewport * fix cine stop when scrollbar changes * feat: use new prefetch events * fix loading state to not show repeatedly * fix: various bugs for tmtv mode thresholding and new icons (#2823) * feat: make tmtv mode available in worklist * feat: add new icons for tmtv mode * feat: add fusion color icon * fix: parallel scale calculation * fix: bump Cornerstone to get large image support working * fix: Fix issues with CPU viewport flipping, including config files * fix: bump cornerstone to fix magnify tool * fix: Bump Cornerstone version to fix resetCamera issue in StackViewport * ci: Add _headers file to enable CORS headers for Netlify Drag/Drop deploys * fix: WADO-URI was not working. PET Metadata was coming from the wrong place. Fixed some minor React errors * feat(OHIF):Allow modes and extensions to be added after commpile time. (#2838) Also works with the compile time add that the existing cli uses, so that both build types work. Eric and I agreed this doesn't change existing functionality, but is almost entirely build issues/fixes. * bump: dependency versions to fix hydration bugs (#2848) * bump: dcmjs version to fix hydration bugs * try to fix tests * bump dependency versions Co-authored-by: Alireza <ar.sedghi@gmail.com> Co-authored-by: Bill Wallace <wayfarer3130@gmail.com>
2022-07-27 18:39:04 +02:00
---
sidebar_position: 1
sidebar_label: Getting Started
---
# Getting Started
## Setup
### Fork & Clone
If you intend to contribute back changes, or if you would like to pull updates
we make to the OHIF Viewer, then follow these steps:
- [Fork][fork-a-repo] the [OHIF/Viewers][ohif-viewers-repo] repository
- [Create a local clone][clone-a-repo] of your fork
- `git clone https://github.com/YOUR-USERNAME/Viewers`
- Add OHIF/Viewers as a [remote repository][add-remote-repo] labeled `upstream`
- Navigate to the cloned project's directory
- `git remote add upstream https://github.com/OHIF/Viewers.git`
With this setup, you can now [sync your fork][sync-changes] to keep it
up-to-date with the upstream (original) repository. This is called a "Triangular
Workflow" and is common for Open Source projects. The GitHub blog has a [good
graphic that illustrates this setup][triangular-workflow].
### Private
Alternatively, if you intend to use the OHIF Viewer as a starting point, and you
aren't as concerned with syncing updates, then follow these steps:
1. Navigate to the [OHIF/Viewers][ohif-viewers] repository
2. Click `Clone or download`, and then `Download ZIP`
3. Use the contents of the `.zip` file as a starting point for your viewer
> NOTE: It is still possible to sync changes using this approach. However,
> submitting pull requests for fixes and features are best done with the
> separate, forked repository setup described in "Fork & Clone"
## Developing
### Requirements
- [Node.js & NPM](https://nodejs.org/en/)
- [Yarn](https://yarnpkg.com/en/)
- Yarn workspaces should be enabled:
- `yarn config set workspaces-experimental true`
### Kick the tires
Navigate to the root of the project's directory in your terminal and run the
following commands:
```bash
# Switch to the v3 branch
git switch v3-stable
# Restore dependencies
yarn install
# Start local development server
yarn run dev
```
You should see the following output:
```bash
@ohif/viewer: i 「wds」: Project is running at http://localhost:3000/
@ohif/viewer: i 「wds」: webpack output is served from /
@ohif/viewer: i 「wds」: Content not from webpack is served from D:\code\ohif\Viewers\platform\viewer
@ohif/viewer: i 「wds」: 404s will fallback to /index.html
# And a list of all generated files
```
### 🎉 Celebrate 🎉
<div style={{padding:"56.25% 0 0 0", position:"relative"}}>
<iframe src="https://player.vimeo.com/video/545988245?badge=0&amp;autopause=0&amp;player_id=0&amp;app_id=58479" frameBorder="0" allow="autoplay; fullscreen; picture-in-picture" allowFullScreen style= {{ position:"absolute",top:0,left:0,width:"100%",height:"100%"}} title="measurement-report"></iframe>
</div>
### Building for Production
> More comprehensive guides for building and publishing can be found in our
> [deployment docs](./../deployment/index.md)
```bash
# Build static assets to host a PWA
yarn run build
```
## Troubleshooting
- If you receive a _"No Studies Found"_ message and do not see your studies, try
changing the Study Date filters to a wider range.
- If you see a 'Loading' message which never resolves, check your browser's
JavaScript console inside the Developer Tools to identify any errors.
<!--
Links
-->
<!-- prettier-ignore-start -->
[fork-a-repo]: https://help.github.com/en/articles/fork-a-repo
[clone-a-repo]: https://help.github.com/en/articles/fork-a-repo#step-2-create-a-local-clone-of-your-fork
[add-remote-repo]: https://help.github.com/en/articles/fork-a-repo#step-3-configure-git-to-sync-your-fork-with-the-original-spoon-knife-repository
[sync-changes]: https://help.github.com/en/articles/syncing-a-fork
[triangular-workflow]: https://github.blog/2015-07-29-git-2-5-including-multiple-worktrees-and-triangular-workflows/#improved-support-for-triangular-workflows
[ohif-viewers-repo]: https://github.com/OHIF/Viewers
[ohif-viewers]: https://github.com/OHIF/Viewers
<!-- prettier-ignore-end -->