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ohif-viewer/extensions/default/src/DicomWebDataSource/index.js

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create dicom web api
2020-05-07 15:56:26 +02:00
import { api } from 'dicomweb-client';
basic initial search and passing data to LayoutTemplate for list route
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import { mapParams, search as qidoSearch, processResults } from './qido.js';
WIP build up displaysets.
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import { dicomMetadataStore, IWebApiDataSource, utils } from '@ohif/core';
import * as dcmjs from 'dcmjs';
//import { retrieveStudyMetadata } from './retrieveStudyMetadata.js';
const { urlUtil } = utils;
const exampleInstances = [
{
'00080005': { vr: 'CS', Value: ['ISO_IR 100'] },
'00080008': { vr: 'CS', Value: ['ORIGINAL', 'PRIMARY', 'LOCALIZER'] },
'00080016': { vr: 'UI', Value: ['1.2.840.10008.5.1.4.1.1.2'] },
'00080018': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.6'],
},
'00080020': { vr: 'DA', Value: ['20141125'] },
'00080021': { vr: 'DA', Value: ['20141125'] },
'00080022': { vr: 'DA', Value: ['20141125'] },
'00080023': { vr: 'DA', Value: ['20141125'] },
'00080030': { vr: 'TM', Value: ['094528.000'] },
'00080031': { vr: 'TM', Value: ['094604.688'] },
'00080032': { vr: 'TM', Value: ['094623.600'] },
'00080033': { vr: 'TM', Value: ['094623.600'] },
'00080050': { vr: 'SH', Value: ['000092218'] },
'00080060': { vr: 'CS', Value: ['CT'] },
'00080070': { vr: 'LO', Value: ['TOSHIBA'] },
'00080080': { vr: 'LO', Value: ['Precision Imaging Metrics'] },
'00080090': { vr: 'PN' },
'00081010': { vr: 'SH' },
'00081030': { vr: 'LO', Value: ['DFCI CT CHEST W CONTRAST 6023'] },
'00081032': {
vr: 'SQ',
Value: [
{
'00080100': { vr: 'SH', Value: ['6023'] },
'00080102': { vr: 'SH', Value: ['GEIIS'] },
'00080103': { vr: 'SH', Value: ['0'] },
'00080104': { vr: 'LO', Value: ['DFCI CT CHEST W CONTRAST 6023'] },
},
],
},
'0008103E': { vr: 'LO', Value: ['2.0'] },
'00081040': { vr: 'LO' },
'00081070': { vr: 'PN' },
'00081090': { vr: 'LO', Value: ['Aquilion'] },
'00081110': {
vr: 'SQ',
Value: [
{
'00081150': { vr: 'UI', Value: ['1.2.840.100008.3.1.2.3.1'] },
'00081155': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.4'],
},
},
],
},
'00100010': { vr: 'PN', Value: [{ Alphabetic: 'Venus' }] },
'00100020': { vr: 'LO', Value: ['0000005'] },
'00100021': { vr: 'LO', Value: ['001R74:20050625:205502036:195212'] },
'00100030': { vr: 'DA' },
'00100040': { vr: 'CS', Value: ['F'] },
'00101000': { vr: 'LO' },
'00101010': { vr: 'AS' },
'00101020': { vr: 'DS' },
'00101030': { vr: 'DS' },
'00104000': { vr: 'LT' },
'00180015': { vr: 'CS', Value: ['CHEST_TO_PELVIS'] },
'00180022': { vr: 'CS', Value: ['SCANOSCOPE'] },
'00180050': { vr: 'DS', Value: [2.0] },
'00180060': { vr: 'DS', Value: [120.0] },
'00180090': { vr: 'DS', Value: [1000.0] },
'00181000': { vr: 'LO' },
'00181020': { vr: 'LO', Value: ['V4.86ER003'] },
'00181030': { vr: 'LO', Value: ['Chest / Abdomen/Pelvis 5mm'] },
'00181100': { vr: 'DS', Value: [1000.0] },
'00181120': { vr: 'DS', Value: [0.0] },
'00181130': { vr: 'DS', Value: [102.0] },
'00181140': { vr: 'CS', Value: ['CW'] },
'00181150': { vr: 'IS', Value: [6840] },
'00181151': { vr: 'IS', Value: [100] },
'00181152': { vr: 'IS', Value: [600] },
'00181160': { vr: 'SH', Value: ['LARGE'] },
'00181170': { vr: 'IS', Value: [12] },
'00181190': { vr: 'DS', Value: [1.6, 1.4] },
'00181210': { vr: 'SH', Value: ['FL03'] },
'00185100': { vr: 'CS', Value: ['FFS'] },
'0020000D': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.1'],
},
'0020000E': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.2'],
},
'00200010': { vr: 'SH' },
'00200011': { vr: 'IS', Value: [1] },
'00200012': { vr: 'IS', Value: [2] },
'00200013': { vr: 'IS', Value: [2] },
'00200020': { vr: 'CS', Value: ['F', 'P'] },
'00200032': { vr: 'DS', Value: [-1.7e-4, -512.0, 1925.0] },
'00200037': { vr: 'DS', Value: [0.0, 0.0, -1.0, 0.0, 1.0, -0.0] },
'00200052': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.5'],
},
'00201040': { vr: 'LO' },
'00201041': { vr: 'DS', Value: [342.0] },
'00280002': { vr: 'US', Value: [1] },
'00280004': { vr: 'CS', Value: ['MONOCHROME2'] },
'00280010': { vr: 'US', Value: [512] },
'00280011': { vr: 'US', Value: [512] },
'00280030': { vr: 'DS', Value: [2.0, 2.0] },
'00280100': { vr: 'US', Value: [16] },
'00280101': { vr: 'US', Value: [16] },
'00280102': { vr: 'US', Value: [15] },
'00280103': { vr: 'US', Value: [1] },
'00281050': { vr: 'DS', Value: [110.0] },
'00281051': { vr: 'DS', Value: [320.0] },
'00281052': { vr: 'DS', Value: [0.0] },
'00281053': { vr: 'DS', Value: [1.0] },
'00321033': { vr: 'LO', Value: ['OUTDFRAD'] },
'00400002': { vr: 'DA', Value: ['20141125'] },
'00400003': { vr: 'TM', Value: ['091000'] },
'00400004': { vr: 'DA', Value: ['20141125'] },
'00400005': { vr: 'TM', Value: ['094000.000'] },
'00400244': { vr: 'DA', Value: ['20141125'] },
'00400245': { vr: 'TM', Value: ['094528.000'] },
'00400253': { vr: 'SH', Value: ['3708'] },
'00400260': {
vr: 'SQ',
Value: [
{
'00080100': { vr: 'SH', Value: ['6035'] },
'00080102': { vr: 'SH', Value: ['CCG_CSTemp'] },
'00080104': { vr: 'LO', Value: ['6035/DFCT2 CT 3-SITES W/OC'] },
},
],
},
'00402017': { vr: 'LO', Value: ['14159097'] },
'7FE00010': {
vr: 'OW',
BulkDataURI:
'http://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs/studies/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.1/series/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.2/instances/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.6',
},
},
{
'00080005': { vr: 'CS', Value: ['ISO_IR 100'] },
'00080008': { vr: 'CS', Value: ['ORIGINAL', 'PRIMARY', 'LOCALIZER'] },
'00080016': { vr: 'UI', Value: ['1.2.840.10008.5.1.4.1.1.2'] },
'00080018': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.3'],
},
'00080020': { vr: 'DA', Value: ['20141125'] },
'00080021': { vr: 'DA', Value: ['20141125'] },
'00080022': { vr: 'DA', Value: ['20141125'] },
'00080023': { vr: 'DA', Value: ['20141125'] },
'00080030': { vr: 'TM', Value: ['094528.000'] },
'00080031': { vr: 'TM', Value: ['094604.688'] },
'00080032': { vr: 'TM', Value: ['094557.250'] },
'00080033': { vr: 'TM', Value: ['094557.250'] },
'00080050': { vr: 'SH', Value: ['000092218'] },
'00080060': { vr: 'CS', Value: ['CT'] },
'00080070': { vr: 'LO', Value: ['TOSHIBA'] },
'00080080': { vr: 'LO', Value: ['Precision Imaging Metrics'] },
'00080090': { vr: 'PN' },
'00081010': { vr: 'SH' },
'00081030': { vr: 'LO', Value: ['DFCI CT CHEST W CONTRAST 6023'] },
'00081032': {
vr: 'SQ',
Value: [
{
'00080100': { vr: 'SH', Value: ['6023'] },
'00080102': { vr: 'SH', Value: ['GEIIS'] },
'00080103': { vr: 'SH', Value: ['0'] },
'00080104': { vr: 'LO', Value: ['DFCI CT CHEST W CONTRAST 6023'] },
},
],
},
'0008103E': { vr: 'LO', Value: ['2.0'] },
'00081040': { vr: 'LO' },
'00081070': { vr: 'PN' },
'00081090': { vr: 'LO', Value: ['Aquilion'] },
'00081110': {
vr: 'SQ',
Value: [
{
'00081150': { vr: 'UI', Value: ['1.2.840.100008.3.1.2.3.1'] },
'00081155': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.4'],
},
},
],
},
'00100010': { vr: 'PN', Value: [{ Alphabetic: 'Venus' }] },
'00100020': { vr: 'LO', Value: ['0000005'] },
'00100021': { vr: 'LO', Value: ['001R74:20050625:205502036:195212'] },
'00100030': { vr: 'DA' },
'00100040': { vr: 'CS', Value: ['F'] },
'00101000': { vr: 'LO' },
'00101010': { vr: 'AS' },
'00101020': { vr: 'DS' },
'00101030': { vr: 'DS' },
'00104000': { vr: 'LT' },
'00180015': { vr: 'CS', Value: ['CHEST_TO_PELVIS'] },
'00180022': { vr: 'CS', Value: ['SCANOSCOPE'] },
'00180050': { vr: 'DS', Value: [2.0] },
'00180060': { vr: 'DS', Value: [120.0] },
'00180090': { vr: 'DS', Value: [1000.0] },
'00181000': { vr: 'LO' },
'00181020': { vr: 'LO', Value: ['V4.86ER003'] },
'00181030': { vr: 'LO', Value: ['Chest / Abdomen/Pelvis 5mm'] },
'00181100': { vr: 'DS', Value: [1000.0] },
'00181120': { vr: 'DS', Value: [0.0] },
'00181130': { vr: 'DS', Value: [102.0] },
'00181140': { vr: 'CS', Value: ['CW'] },
'00181150': { vr: 'IS', Value: [6857] },
'00181151': { vr: 'IS', Value: [50] },
'00181152': { vr: 'IS', Value: [300] },
'00181160': { vr: 'SH', Value: ['LARGE'] },
'00181170': { vr: 'IS', Value: [6] },
'00181190': { vr: 'DS', Value: [1.6, 1.4] },
'00181210': { vr: 'SH', Value: ['FL03'] },
'00185100': { vr: 'CS', Value: ['FFS'] },
'0020000D': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.1'],
},
'0020000E': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.2'],
},
'00200010': { vr: 'SH' },
'00200011': { vr: 'IS', Value: [1] },
'00200012': { vr: 'IS', Value: [1] },
'00200013': { vr: 'IS', Value: [1] },
'00200020': { vr: 'CS', Value: ['L', 'F'] },
'00200032': { vr: 'DS', Value: [-512.0, 1.7e-4, 1925.0] },
'00200037': { vr: 'DS', Value: [1.0, 0.0, 0.0, 0.0, 0.0, -1.0] },
'00200052': {
vr: 'UI',
Value: ['1.3.6.1.4.1.25403.345050719074.3824.20170126082902.5'],
},
'00201040': { vr: 'LO' },
'00201041': { vr: 'DS', Value: [342.0] },
'00280002': { vr: 'US', Value: [1] },
'00280004': { vr: 'CS', Value: ['MONOCHROME2'] },
'00280010': { vr: 'US', Value: [512] },
'00280011': { vr: 'US', Value: [512] },
'00280030': { vr: 'DS', Value: [2.0, 2.0] },
'00280100': { vr: 'US', Value: [16] },
'00280101': { vr: 'US', Value: [16] },
'00280102': { vr: 'US', Value: [15] },
'00280103': { vr: 'US', Value: [1] },
'00281050': { vr: 'DS', Value: [100.0] },
'00281051': { vr: 'DS', Value: [230.0] },
'00281052': { vr: 'DS', Value: [0.0] },
'00281053': { vr: 'DS', Value: [1.0] },
'00321033': { vr: 'LO', Value: ['OUTDFRAD'] },
'00400002': { vr: 'DA', Value: ['20141125'] },
'00400003': { vr: 'TM', Value: ['091000'] },
'00400004': { vr: 'DA', Value: ['20141125'] },
'00400005': { vr: 'TM', Value: ['094000.000'] },
'00400244': { vr: 'DA', Value: ['20141125'] },
'00400245': { vr: 'TM', Value: ['094528.000'] },
'00400253': { vr: 'SH', Value: ['3708'] },
'00400260': {
vr: 'SQ',
Value: [
{
'00080100': { vr: 'SH', Value: ['6035'] },
'00080102': { vr: 'SH', Value: ['CCG_CSTemp'] },
'00080104': { vr: 'LO', Value: ['6035/DFCT2 CT 3-SITES W/OC'] },
},
],
},
'00402017': { vr: 'LO', Value: ['14159097'] },
'7FE00010': {
vr: 'OW',
BulkDataURI:
'http://server.dcmjs.org/dcm4chee-arc/aets/DCM4CHEE/rs/studies/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.1/series/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.2/instances/1.3.6.1.4.1.25403.345050719074.3824.20170126082902.3',
},
},
];
create dicom web api
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/**
*
* @param {string} name - Data source name
* @param {string} wadoUriRoot - Legacy? (potentially unused/replaced)
* @param {string} qidoRoot - Base URL to use for QIDO requests
* @param {string} wadoRoot - Base URL to use for WADO requests
* @param {boolean} qidoSupportsIncludeField - Whether QIDO supports the "Include" option to request additional fields in response
* @param {string} imageRengering - wadors | ? (unsure of where/how this is used)
* @param {string} thumbnailRendering - wadors | ? (unsure of where/how this is used)
* @param {bool} lazyLoadStudy - "enableStudyLazyLoad"; Request series meta async instead of blocking
*/
function createDicomWebApi(dicomWebConfig) {
WIP build up displaysets.
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const { qidoRoot, wadoRoot, enableStudyLazyLoad } = dicomWebConfig;
const qidoConfig = {
create dicom web api
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url: qidoRoot,
// headers: DICOMWeb.getAuthorizationHeader(server),
};
WIP build up displaysets.
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const wadoConfig = {
url: wadoRoot,
};
// TODO -> Two clients sucks, but its better than 1000.
// TODO -> We'll need to merge auth later.
const qidoDicomWebClient = new api.DICOMwebClient(qidoConfig);
const wadoDicomWebClient = new api.DICOMwebClient(wadoConfig);
create dicom web api
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Hydrate our first data source
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return IWebApiDataSource.create({
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query: {
studies: {
mapParams: mapParams.bind(),
basic initial search and passing data to LayoutTemplate for list route
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search: async function(origParams) {
const { studyInstanceUid, seriesInstanceUid, ...mappedParams } =
mapParams(origParams) || {};
const results = await qidoSearch(
WIP build up displaysets.
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qidoDicomWebClient,
basic initial search and passing data to LayoutTemplate for list route
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studyInstanceUid,
seriesInstanceUid,
mappedParams
);
return processResults(results);
},
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processResults: processResults.bind(),
},
instances: {
search: (studyInstanceUid, queryParamaters) =>
basic initial search and passing data to LayoutTemplate for list route
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qidoSearch.call(
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undefined,
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qidoDicomWebClient,
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studyInstanceUid,
null,
queryParamaters
),
},
},
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retrieve: {
series: {
metadata: (queryParams, callback) => {
let { StudyInstanceUIDs } = urlUtil.parse(queryParams, true);
StudyInstanceUIDs = urlUtil.paramString.parseParam(StudyInstanceUIDs);
if (!StudyInstanceUIDs) {
throw new Error(
'Incomplete queryParams, missing StudyInstanceUIDs'
);
}
// const promises = StudyInstanceUIDs.map(StudyInstanceUID =>
// retrieveStudyMetadata(
// wadoDicomWebClient,
// StudyInstanceUID,
// enableStudyLazyLoad
// )
// );
// TEMP use dummy data.
const { naturalizeDataset } = dcmjs.data.DicomMetaDictionary;
const instances = exampleInstances.map(naturalizeDataset);
// TEMP
dicomMetadataStore.addInstances(instances);
callback(instances);
},
},
},
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});
}
export { createDicomWebApi };
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