ohif-viewer/extensions/dicom-microscopy/src/utils/cleanDenaturalizedDataset.ts

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feat(microscopy): add dicom microscopy extension and mode (#3247) * skeleton for dicom-microscopy extension * skeleton for microscopy mode * [feat] ported @radicalimaging/microscopy-dicom to OHIF's default extension * [feat] ported microscopy mode from private repo * added new definitions to the package.json * webpack configuration update for microscopy extension * register new icons for microscopy tools * fixes to the microscopy extension and mode * trivial error fix - typescript type import error * link microscopy extension with default OHIF app plugin config * demo config fix * fix logs * remove unsed imports * [fix] loading of microscopy * [fix] webworker script loading, normalizing denaturalized dataset * found the latest version of dicom-microscopy-viewer that works with current OHIF extension : 0.35.2 * hide thumbnail pane by default, as we have issues with * comments * remove unused code * [feat] microscopy - annotation selection * [feat] microscopy - edit annotation label * wip * [bugfix] dicom-microscopy tool * [bugfix] dicom microscopy annotations * [fix] mixed-content blocking caused by BulkDataURI * [fix] microscopy measurements panel - center button * [fix] microscopy measurements panel - styling * [fix] microscopy - controls * fix local loading of microscopy * fix local loading of dicom microscopy * fix typo - indexof to indexOf * [fix] remove unused icons * remove commented out lines from webpack configuration * platform/viewer/public/config/default.js - revert accidental changes * [refactor] redirecting to microscopy mode on Local mode * attribution to DMV and SLIM viewer * [fix] code review feedbacks * fix thumbnails * [fix] microscopy - fix old publisher.publish() to PubSubService._broadcastEvent() * [fix] interactions, webpack config, roi selection * [feat] microscopy - remove select tool from UI * microscopy author * [fix] saving and loading SR * [bugfix] - missing publish() function in MicroscopyService, replace with _broadcastEvent * remove author section from readme * refactor SR saving feature * fix webpack config after merge * [bugfix] repeated import * fix e2e * webpack configuration * hide "Create report" button for microscopy
2023-04-28 02:53:52 +02:00
function isPrimitive(v: any) {
return !(typeof v == 'object' || Array.isArray(v));
}
const vrNumerics = [
'DS',
'FL',
'FD',
'IS',
'OD',
'OF',
'OL',
'OV',
'SL',
'SS',
'SV',
'UL',
'US',
'UV',
];
/**
* Specialized for DICOM JSON format dataset cleaning.
* @param obj
* @returns
*/
export default function cleanDenaturalizedDataset(obj: any): any {
if (Array.isArray(obj)) {
const newAry = obj.map(o =>
isPrimitive(o) ? o : cleanDenaturalizedDataset(o)
);
return newAry;
} else if (isPrimitive(obj)) {
return obj;
} else {
Object.keys(obj).forEach(key => {
if (obj[key].Value === null && obj[key].vr) {
delete obj[key].Value;
} else if (Array.isArray(obj[key].Value) && obj[key].vr) {
if (obj[key].Value.length === 1 && obj[key].Value[0].BulkDataURI) {
obj[key].BulkDataURI = obj[key].Value[0].BulkDataURI;
// prevent mixed-content blockage
if (
window.location.protocol === 'https:' &&
obj[key].BulkDataURI.startsWith('http:')
) {
obj[key].BulkDataURI = obj[key].BulkDataURI.replace(
'http:',
'https:'
);
}
delete obj[key].Value;
} else if (vrNumerics.includes(obj[key].vr)) {
obj[key].Value = obj[key].Value.map(v => +v);
} else {
obj[key].Value = obj[key].Value.map(cleanDenaturalizedDataset);
}
}
});
return obj;
}
}